HL_8GHU_013

3D structure

PDB id

8GHU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Methyltransferase RmtC bound to the 30S ribosomal subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

CAGCCG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8GHU_013 not in the Motif Atlas

Geometric match to HL_1MFQ_001

Geometric discrepancy: 0.3741

The information below is about HL_1MFQ_001

Detailed Annotation

GNRA variation

Broad Annotation

GNRA variation

Motif group

HL_34789.1

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

335

Unit IDs

8GHU|1|a|C|522
8GHU|1|a|A|523
8GHU|1|a|G|524
8GHU|1|a|C|525
8GHU|1|a|C|526
8GHU|1|a|G|527

Current chains

Chain a

16S rRNA

Nearby chains

Chain l

30S ribosomal protein S12