HL_8GLP_014

3D structure

PDB id

8GLP (explore in PDB, NAKB, or RNA 3D Hub)

Description

mRNA decoding in human is kinetically and structurally distinct from bacteria (Consensus LSU focused refined structure)

Experimental method

ELECTRON MICROSCOPY

Resolution

1.67 Å

Loop

Sequence

GUCCCC

Length

6 nucleotides

Bulged bases

8GLP|1|L5|U|1179, 8GLP|1|L5|C|1180, 8GLP|1|L5|C|1182

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8GLP_014 not in the Motif Atlas

Geometric match to HL_4QOZ_001

Geometric discrepancy: 0.1353

The information below is about HL_4QOZ_001

Detailed Annotation

Mini UNCG

Broad Annotation

No text annotation

Motif group

HL_56334.1

Basepair signature

cWW-F

Number of instances in this motif group

16

Unit IDs

8GLP|1|L5|G|1178
8GLP|1|L5|U|1179
8GLP|1|L5|C|1180
8GLP|1|L5|C|1181
8GLP|1|L5|C|1182
8GLP|1|L5|C|1183

Current chains

Chain L5

28S rRNA

Nearby chains

Chain L7

5S ribosomal RNA; 5S rRNA

Chain LD

60S ribosomal protein L5

Chain LI

60S ribosomal protein L10