HL_8GLP_046

3D structure

PDB id

8GLP (explore in PDB, NAKB, or RNA 3D Hub)

Description

mRNA decoding in human is kinetically and structurally distinct from bacteria (Consensus LSU focused refined structure)

Experimental method

ELECTRON MICROSCOPY

Resolution

1.67 Å

Loop

Sequence

UGAAC(A2M)G

Length

7 nucleotides

Bulged bases

8GLP|1|L5|C|2814

QA status

Modified nucleotides: A2M

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8GLP_046 not in the Motif Atlas

Homologous match to HL_5TBW_042

Geometric discrepancy: 0.0707

The information below is about HL_5TBW_042

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

360

Unit IDs

8GLP|1|L5|U|2810
8GLP|1|L5|G|2811
8GLP|1|L5|A|2812
8GLP|1|L5|A|2813
8GLP|1|L5|C|2814
8GLP|1|L5|A2M|2815
8GLP|1|L5|G|2816

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LR

60S ribosomal protein L19