HL_8GLP_053

3D structure

PDB id

8GLP (explore in PDB, NAKB, or RNA 3D Hub)

Description

mRNA decoding in human is kinetically and structurally distinct from bacteria (Consensus LSU focused refined structure)

Experimental method

ELECTRON MICROSCOPY

Resolution

1.67 Å

Loop

Sequence

G(PSU)A(A2M)C(PSU)A(PSU)GAC

Length

11 nucleotides

Bulged bases

8GLP|1|L5|C|3761, 8GLP|1|L5|A|3763

QA status

Modified nucleotides: PSU, A2M

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8GLP_053 not in the Motif Atlas

Homologous match to HL_8C3A_049

Geometric discrepancy: 0.4286

The information below is about HL_8C3A_049

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_84702.1

Basepair signature

cWW-F-F-tHW-F-F-F-F

Number of instances in this motif group

4

Unit IDs

8GLP|1|L5|G|3757
8GLP|1|L5|PSU|3758
8GLP|1|L5|A|3759
8GLP|1|L5|A2M|3760
8GLP|1|L5|C|3761
8GLP|1|L5|PSU|3762
8GLP|1|L5|A|3763
8GLP|1|L5|PSU|3764
8GLP|1|L5|G|3765
8GLP|1|L5|A|3766
8GLP|1|L5|C|3767

Current chains

Chain L5

28S rRNA

Nearby chains

Chain Pt

Transfer RNA; tRNA

Chain S2

Small subunit ribosomal RNA; SSU rRNA