HL_8GLP_065

3D structure

PDB id

8GLP (explore in PDB, NAKB, or RNA 3D Hub)

Description

mRNA decoding in human is kinetically and structurally distinct from bacteria (Consensus LSU focused refined structure)

Experimental method

ELECTRON MICROSCOPY

Resolution

1.67 Å

Loop

Sequence

U(PSU)UGGGUUU(PSU)A

Length

11 nucleotides

Bulged bases

8GLP|1|L5|U|4354

QA status

Modified nucleotides: PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8GLP_065 not in the Motif Atlas

Homologous match to HL_5TBW_060

Geometric discrepancy: 0.5238

The information below is about HL_5TBW_060

Detailed Annotation

Pseudoknot geometry

Broad Annotation

No text annotation

Motif group

HL_93324.1

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

26

Unit IDs

8GLP|1|L5|U|4352
8GLP|1|L5|PSU|4353
8GLP|1|L5|U|4354
8GLP|1|L5|G|4355
8GLP|1|L5|G|4356
8GLP|1|L5|G|4357
8GLP|1|L5|U|4358
8GLP|1|L5|U|4359
8GLP|1|L5|U|4360
8GLP|1|L5|PSU|4361
8GLP|1|L5|A|4362

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LL

60S ribosomal protein L13

Chain La

60S ribosomal protein L27a

Chain Li

60S ribosomal protein L36

Chain Lo

60S ribosomal protein L36a