3D structure

PDB id
8GLP (explore in PDB, NAKB, or RNA 3D Hub)
Description
mRNA decoding in human is kinetically and structurally distinct from bacteria (Consensus LSU focused refined structure)
Experimental method
ELECTRON MICROSCOPY
Resolution
1.67 Å

Loop

Sequence
AGCAGAAU
Length
8 nucleotides
Bulged bases
8GLP|1|L5|G|4475
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_8GLP_067 not in the Motif Atlas
Homologous match to HL_5TBW_062
Geometric discrepancy: 0.0834
The information below is about HL_5TBW_062
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
HL_79150.1
Basepair signature
cWW-F-F-F-F-F
Number of instances in this motif group
12

Unit IDs

8GLP|1|L5|A|4474
8GLP|1|L5|G|4475
8GLP|1|L5|C|4476
8GLP|1|L5|A|4477
8GLP|1|L5|G|4478
8GLP|1|L5|A|4479
8GLP|1|L5|A|4480
8GLP|1|L5|U|4481

Current chains

Chain L5
28S rRNA

Nearby chains

Chain LH
60S ribosomal protein L9
Chain Lm
60S ribosomal protein L40 (eL40)

Coloring options:


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