HL_8GLP_068

3D structure

PDB id

8GLP (explore in PDB, NAKB, or RNA 3D Hub)

Description

mRNA decoding in human is kinetically and structurally distinct from bacteria (Consensus LSU focused refined structure)

Experimental method

ELECTRON MICROSCOPY

Resolution

1.67 Å

Loop

Sequence

U(OMU)(OMG)(PSU)UCA

Length

7 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: OMU, OMG, PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8GLP_068 not in the Motif Atlas

Geometric match to HL_2ZNI_001

Geometric discrepancy: 0.3148

The information below is about HL_2ZNI_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75660.5

Basepair signature

cWW-F

Number of instances in this motif group

19

Unit IDs

8GLP|1|L5|U|4497
8GLP|1|L5|OMU|4498
8GLP|1|L5|OMG|4499
8GLP|1|L5|PSU|4500
8GLP|1|L5|U|4501
8GLP|1|L5|C|4502
8GLP|1|L5|A|4503

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LB

60S ribosomal protein L3