HL_8GLP_072

3D structure

PDB id

8GLP (explore in PDB, NAKB, or RNA 3D Hub)

Description

mRNA decoding in human is kinetically and structurally distinct from bacteria (Consensus LSU focused refined structure)

Experimental method

ELECTRON MICROSCOPY

Resolution

1.67 Å

Loop

Sequence

C(PSU)GAACGCCUCUAAG

Length

15 nucleotides

Bulged bases

8GLP|1|L5|G|4694, 8GLP|1|L5|C|4698

QA status

Modified nucleotides: PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_53269.1

Basepair signature

cWW-tWH-tSH-cWH-tSH-tHW-tHW-tSW

Number of instances in this motif group

11

Unit IDs

8GLP|1|L5|C|4688
8GLP|1|L5|PSU|4689
8GLP|1|L5|G|4690
8GLP|1|L5|A|4691
8GLP|1|L5|A|4692
8GLP|1|L5|C|4693
8GLP|1|L5|G|4694
8GLP|1|L5|C|4695
8GLP|1|L5|C|4696
8GLP|1|L5|U|4697
8GLP|1|L5|C|4698
8GLP|1|L5|U|4699
8GLP|1|L5|A|4700
8GLP|1|L5|A|4701
8GLP|1|L5|G|4702

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LH

60S ribosomal protein L9

Chain LO

60S ribosomal protein L13a

Chain Lm

60S ribosomal protein L40 (eL40)