HL_8GLP_073

3D structure

PDB id

8GLP (explore in PDB, NAKB, or RNA 3D Hub)

Description

mRNA decoding in human is kinetically and structurally distinct from bacteria (Consensus LSU focused refined structure)

Experimental method

ELECTRON MICROSCOPY

Resolution

1.67 Å

Loop

Sequence

CCGCG

Length

5 nucleotides

Bulged bases

8GLP|1|L5|G|4776, 8GLP|1|L5|C|4859

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8GLP_073 not in the Motif Atlas

Geometric match to HL_4V9F_003

Geometric discrepancy: 0.314

The information below is about HL_4V9F_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75660.5

Basepair signature

cWW-F

Number of instances in this motif group

19

Unit IDs

8GLP|1|L5|C|4774
8GLP|1|L5|C|4775
8GLP|1|L5|G|4776
8GLP|1|L5|C|4859
8GLP|1|L5|G|4860

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LO

60S ribosomal protein L13a