HL_8GLP_082

3D structure

PDB id

8GLP (explore in PDB, NAKB, or RNA 3D Hub)

Description

mRNA decoding in human is kinetically and structurally distinct from bacteria (Consensus LSU focused refined structure)

Experimental method

ELECTRON MICROSCOPY

Resolution

1.67 Å

Loop

Sequence

CAGCCCGG(H2U)AG

Length

11 nucleotides

Bulged bases

8GLP|1|Pt|G|19, 8GLP|1|Pt|G|20

QA status

Modified nucleotides: H2U

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8GLP_082 not in the Motif Atlas

Homologous match to HL_4LCK_001

Geometric discrepancy: 0.1261

The information below is about HL_4LCK_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8GLP|1|Pt|C|13
8GLP|1|Pt|A|14
8GLP|1|Pt|G|15
8GLP|1|Pt|C|16
8GLP|1|Pt|C|17
8GLP|1|Pt|C|18
8GLP|1|Pt|G|19
8GLP|1|Pt|G|20
8GLP|1|Pt|H2U|21
8GLP|1|Pt|A|22
8GLP|1|Pt|G|23

Current chains

Chain Pt

P-site tRNA

Nearby chains

Chain L5

Large subunit ribosomal RNA; LSU rRNA

Chain LJ

60S ribosomal protein L11

Chain Lo

60S ribosomal protein L36a