HL_8GLP_086

3D structure

PDB id

8GLP (explore in PDB, NAKB, or RNA 3D Hub)

Description

mRNA decoding in human is kinetically and structurally distinct from bacteria (Consensus LSU focused refined structure)

Experimental method

ELECTRON MICROSCOPY

Resolution

1.67 Å

Loop

Sequence

CGGCCGGUACAG

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8GLP_086 not in the Motif Atlas

Geometric match to HL_4YAZ_004

Geometric discrepancy: 0.2304

The information below is about HL_4YAZ_004

Detailed Annotation

Mini UNCG

Broad Annotation

No text annotation

Motif group

HL_48778.2

Basepair signature

cWW-F

Number of instances in this motif group

46

Unit IDs

8GLP|1|S2|C|69
8GLP|1|S2|G|70
8GLP|1|S2|G|71
8GLP|1|S2|C|72
8GLP|1|S2|C|73
8GLP|1|S2|G|74
8GLP|1|S2|G|75
8GLP|1|S2|U|76
8GLP|1|S2|A|77
8GLP|1|S2|C|78
8GLP|1|S2|A|79
8GLP|1|S2|G|80

Current chains

Chain S2

18S rRNA

Nearby chains

Chain LW

60S ribosomal protein L24

Chain SG

40S ribosomal protein S6