HL_8GLP_087

3D structure

PDB id

8GLP (explore in PDB, NAKB, or RNA 3D Hub)

Description

mRNA decoding in human is kinetically and structurally distinct from bacteria (Consensus LSU focused refined structure)

Experimental method

ELECTRON MICROSCOPY

Resolution

1.67 Å

Loop

Sequence

GUA(A2M)UUC

Length

7 nucleotides

Bulged bases

8GLP|1|S2|A|158, 8GLP|1|S2|U|160, 8GLP|1|S2|U|161

QA status

Modified nucleotides: A2M

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8GLP_087 not in the Motif Atlas

Homologous match to HL_4V88_188

Geometric discrepancy: 0.1697

The information below is about HL_4V88_188

Detailed Annotation

GNRA related

Broad Annotation

GNRA related

Motif group

HL_37824.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

360

Unit IDs

8GLP|1|S2|G|156
8GLP|1|S2|U|157
8GLP|1|S2|A|158
8GLP|1|S2|A2M|159
8GLP|1|S2|U|160
8GLP|1|S2|U|161
8GLP|1|S2|C|162

Current chains

Chain S2

18S rRNA

Nearby chains

Chain SG

40S ribosomal protein S6

Chain SY

40S ribosomal protein S24