HL_8GLP_088

3D structure

PDB id

8GLP (explore in PDB, NAKB, or RNA 3D Hub)

Description

mRNA decoding in human is kinetically and structurally distinct from bacteria (Consensus LSU focused refined structure)

Experimental method

ELECTRON MICROSCOPY

Resolution

1.67 Å

Loop

Sequence

CUUCGCGG

Length

8 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8GLP_088 not in the Motif Atlas

Geometric match to HL_8C3A_221

Geometric discrepancy: 0.257

The information below is about HL_8C3A_221

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_48417.3

Basepair signature

cWW-F-F

Number of instances in this motif group

23

Unit IDs

8GLP|1|S2|C|196
8GLP|1|S2|U|197
8GLP|1|S2|U|198
8GLP|1|S2|C|199
8GLP|1|S2|G|200
8GLP|1|S2|C|201
8GLP|1|S2|G|202
8GLP|1|S2|G|203

Current chains

Chain S2

18S rRNA

Nearby chains

Chain SI

40S ribosomal protein S8