HL_8GLP_090

3D structure

PDB id

8GLP (explore in PDB, NAKB, or RNA 3D Hub)

Description

mRNA decoding in human is kinetically and structurally distinct from bacteria (Consensus LSU focused refined structure)

Experimental method

ELECTRON MICROSCOPY

Resolution

1.67 Å

Loop

Sequence

CCCCG

Length

5 nucleotides

Bulged bases

8GLP|1|S2|C|324, 8GLP|1|S2|C|326

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8GLP_090 not in the Motif Atlas

Geometric match to HL_8C3A_022

Geometric discrepancy: 0.2565

The information below is about HL_8C3A_022

Detailed Annotation

Externally structured

Broad Annotation

Externally structured

Motif group

HL_96426.1

Basepair signature

cWW-F

Number of instances in this motif group

4

Unit IDs

8GLP|1|S2|C|323
8GLP|1|S2|C|324
8GLP|1|S2|C|325
8GLP|1|S2|C|326
8GLP|1|S2|G|327

Current chains

Chain S2

18S rRNA

Nearby chains

Chain LW

60S ribosomal protein L24