HL_8GLP_102

3D structure

PDB id

8GLP (explore in PDB, NAKB, or RNA 3D Hub)

Description

mRNA decoding in human is kinetically and structurally distinct from bacteria (Consensus LSU focused refined structure)

Experimental method

ELECTRON MICROSCOPY

Resolution

1.67 Å

Loop

Sequence

GAGGUGAAAU(PSU)C

Length

12 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8GLP|1|S2|G|956
8GLP|1|S2|A|957
8GLP|1|S2|G|958
8GLP|1|S2|G|959
8GLP|1|S2|U|960
8GLP|1|S2|G|961
8GLP|1|S2|A|962
8GLP|1|S2|A|963
8GLP|1|S2|A|964
8GLP|1|S2|U|965
8GLP|1|S2|PSU|966
8GLP|1|S2|C|967

Current chains

Chain S2

18S rRNA

Nearby chains

Chain L5

Large subunit ribosomal RNA; LSU rRNA

Chain SB

40S ribosomal protein S3a

Chain SF

40S ribosomal protein S5

Chain SO

40S ribosomal protein S14

Chain mR

mRNA