HL_8GLP_108

3D structure

PDB id

8GLP (explore in PDB, NAKB, or RNA 3D Hub)

Description

mRNA decoding in human is kinetically and structurally distinct from bacteria (Consensus LSU focused refined structure)

Experimental method

ELECTRON MICROSCOPY

Resolution

1.67 Å

Loop

Sequence

GAC(B8N)CAACAC

Length

10 nucleotides

Bulged bases

8GLP|1|S2|A|1253

QA status

Modified nucleotides: B8N

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_97521.1

Basepair signature

cWW-F-F-F-F-F-F-F

Number of instances in this motif group

5

Unit IDs

8GLP|1|S2|G|1245
8GLP|1|S2|A|1246
8GLP|1|S2|C|1247
8GLP|1|S2|B8N|1248
8GLP|1|S2|C|1249
8GLP|1|S2|A|1250
8GLP|1|S2|A|1251
8GLP|1|S2|C|1252
8GLP|1|S2|A|1253
8GLP|1|S2|C|1254

Current chains

Chain S2

18S rRNA

Nearby chains

Chain Pt

Transfer RNA; tRNA

Chain SP

40S ribosomal protein S15

Chain SQ

40S ribosomal protein S16

Chain SU

40S ribosomal protein S20

Chain Sd

40S ribosomal protein S29