HL_8GLP_109

3D structure

PDB id

8GLP (explore in PDB, NAKB, or RNA 3D Hub)

Description

mRNA decoding in human is kinetically and structurally distinct from bacteria (Consensus LSU focused refined structure)

Experimental method

ELECTRON MICROSCOPY

Resolution

1.67 Å

Loop

Sequence

AUUGAUAGCU

Length

10 nucleotides

Bulged bases

8GLP|1|S2|U|1300, 8GLP|1|S2|G|1302

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8GLP_109 not in the Motif Atlas

Homologous match to HL_4V88_213

Geometric discrepancy: 0.2362

The information below is about HL_4V88_213

Detailed Annotation

Anticodon loop related

Broad Annotation

Anticodon loop related

Motif group

HL_27115.2

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

22

Unit IDs

8GLP|1|S2|A|1295
8GLP|1|S2|U|1296
8GLP|1|S2|U|1297
8GLP|1|S2|G|1298
8GLP|1|S2|A|1299
8GLP|1|S2|U|1300
8GLP|1|S2|A|1301
8GLP|1|S2|G|1302
8GLP|1|S2|C|1303
8GLP|1|S2|U|1304

Current chains

Chain S2

18S rRNA

Nearby chains

Chain SP

40S ribosomal protein S15

Chain Sd

40S ribosomal protein S29

Chain Sf

Ubiquitin-40S ribosomal protein S27a