HL_8GLP_114

3D structure

PDB id

8GLP (explore in PDB, NAKB, or RNA 3D Hub)

Description

mRNA decoding in human is kinetically and structurally distinct from bacteria (Consensus LSU focused refined structure)

Experimental method

ELECTRON MICROSCOPY

Resolution

1.67 Å

Loop

Sequence

CGGCAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8GLP_114 not in the Motif Atlas

Homologous match to HL_4V88_218

Geometric discrepancy: 0.2904

The information below is about HL_4V88_218

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

360

Unit IDs

8GLP|1|S2|C|1565
8GLP|1|S2|G|1566
8GLP|1|S2|G|1567
8GLP|1|S2|C|1568
8GLP|1|S2|A|1569
8GLP|1|S2|G|1570

Current chains

Chain S2

18S rRNA

Nearby chains

Chain SS

40S ribosomal protein S18

Chain ST

40S ribosomal protein S19