HL_8GLP_119

3D structure

PDB id

8GLP (explore in PDB, NAKB, or RNA 3D Hub)

Description

mRNA decoding in human is kinetically and structurally distinct from bacteria (Consensus LSU focused refined structure)

Experimental method

ELECTRON MICROSCOPY

Resolution

1.67 Å

Loop

Sequence

UCUUG(1MA)AAC(A2M)

Length

10 nucleotides

Bulged bases

8GLP|1|L5|C|1325

QA status

Modified nucleotides: 1MA, A2M

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8GLP_119 not in the Motif Atlas

Homologous match to HL_8P9A_126

Geometric discrepancy: 0.0718

The information below is about HL_8P9A_126

Detailed Annotation

T-loop with 2 stacked bulged bases

Broad Annotation

T-loop

Motif group

HL_28252.7

Basepair signature

cWW-tWH-F-F-F-F-F

Number of instances in this motif group

139

Unit IDs

8GLP|1|L5|U|1317
8GLP|1|L5|C|1318
8GLP|1|L5|U|1319
8GLP|1|L5|U|1320
8GLP|1|L5|G|1321
8GLP|1|L5|1MA|1322
8GLP|1|L5|A|1323
8GLP|1|L5|A|1324
8GLP|1|L5|C|1325
8GLP|1|L5|A2M|1326

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LB

60S ribosomal protein L3

Chain La

60S ribosomal protein L27a

Chain Lb

60S ribosomal protein L29

Chain Le

60S ribosomal protein L32