HL_8H0S_002

3D structure

PDB id

8H0S (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of MnmM from B. subtilis complexed with Gln-TTG anti-codon stem loop and SAM (2.90 A)

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

ACUUUGACU

Length

9 nucleotides

Bulged bases (A, C, G, U)

33U, 34U

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_77232.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

5

Unit IDs

8H0S|1|Y|A|31
8H0S|1|Y|C|32
8H0S|1|Y|U|33
8H0S|1|Y|U|34
8H0S|1|Y|U|35
8H0S|1|Y|G|36
8H0S|1|Y|A|37
8H0S|1|Y|C|38
8H0S|1|Y|U|39

Current chains

Chain Y

RNA (5'-R(*AP*CP*GP*GP*AP*CP*UP*UP*UP*GP*AP*CP*UP*CP*CP*GP*U)-3')

Nearby chains

Chain B

Putative rRNA methylase YtqB

Chain C

Putative rRNA methylase YtqB