HL_8HFR_011

3D structure

PDB id

8HFR (explore in PDB, NAKB, or RNA 3D Hub)

Description

NPC-trapped pre-60S particle

Experimental method

ELECTRON MICROSCOPY

Resolution

2.64 Å

Loop

Sequence

UGAAAA

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8HFR_011 not in the Motif Atlas

Homologous match to HL_8C3A_011

Geometric discrepancy: 0.0836

The information below is about HL_8C3A_011

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

360

Unit IDs

8HFR|1|1e|U|382
8HFR|1|1e|G|383
8HFR|1|1e|A|384
8HFR|1|1e|A|385
8HFR|1|1e|A|386
8HFR|1|1e|A|387

Current chains

Chain 1e

25S ribosomal RNA

Nearby chains

Chain Pv

60S ribosomal protein L17-A

Chain pT

Probable metalloprotease ARX1

Chain rA

Nucleolar GTP-binding protein 1