RNA 3D Hub //

8HFR Hairpin, Internal, and multi-helix Junction Loop Motifs

Download loops

Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
HL_8HFR_0011/1e/38:45No text annotation
geometric
HL_5TBW_001
NA
HL_8HFR_0021/1e/69:74No text annotation
homologous
HL_8C3A_002
NA
HL_8HFR_0031/1e/90:96No text annotation
homologous
HL_5TBW_003
NA
HL_8HFR_0041/1e/132:136No text annotation
homologous
HL_8C3A_004
NA
HL_8HFR_0051/1e/194:201T-loop with 2 stacked bulged bases
homologous
HL_8C3A_005
NA
HL_8HFR_0061/1e/208:212No text annotation
homologous
HL_5TBW_006
NA
HL_8HFR_0071/1e/216:224T-loop with unstacked turn
homologous
HL_8C3A_007
NA
HL_8HFR_0081/1e/278:287No text annotation
homologous
HL_5TBW_008
NA
HL_8HFR_0091/1e/303:312Pseudoknot geometry
homologous
HL_5TBW_009
NA
HL_8HFR_0101/1e/357:362GNRA
homologous
HL_5TBW_010
NA
HL_8HFR_0111/1e/382:387GNRA
homologous
HL_8C3A_011
NA
HL_8HFR_0131/1e/599:604GNRA
homologous
HL_5TBW_013
NA
HL_8HFR_0141/1e/640:649T-loop with 2 stacked bulged bases
homologous
HL_8C3A_014
NA
HL_8HFR_0151/1e/686:694No text annotation
homologous
HL_8C3A_015
NA
HL_8HFR_0161/1e/707:712GNRA
homologous
HL_8C3A_016
NA
HL_8HFR_0171/1e/732:737GNRA
homologous
HL_5TBW_017
NA
HL_8HFR_0191/1e/844:849GNRA
homologous
HL_5TBW_019
NA
HL_8HFR_0201/1e/876:885No text annotation
homologous
HL_8C3A_020
NA
HL_8HFR_0211/1e/910:918No text annotation
homologous
HL_5TBW_021
NA
HL_8HFR_0221/1e/958:963Externally structured
homologous
HL_8C3A_022
NA
HL_8HFR_0231/1e/1023:1029No text annotation
geometric
HL_7A0S_007
HL_51020.2
HL_8HFR_0241/1e/1076:1083No text annotation
homologous
HL_8C3A_024
NA
HL_8HFR_0251/1e/1126:1132GNRA
homologous
HL_5TBW_025
NA
HL_8HFR_0261/1e/1148:1155No text annotation
homologous
HL_5TBW_026
NA
HL_8HFR_0271/1e/1239:1249No text annotation
homologous
HL_8C3A_027
NA
HL_8HFR_0281/1e/1267:1274GNRA wlth tandem sheared
homologous
HL_8C3A_028
NA
HL_8HFR_0291/1e/1347:1357Mini UNCG
geometric
HL_4OOG_001
HL_12626.2
HL_8HFR_0301/1e/1403:1408GNRA
homologous
HL_5TBW_030
NA
HL_8HFR_0311/1e/1462:1470T-loop with 2 stacked bulged bases
homologous
HL_8C3A_031
NA
HL_8HFR_0321/1e/1506:1512Pseudoknot geometry with 3' bulge
homologous
HL_5TBW_032
NA
HL_8HFR_0331/1e/1544:1549GNRA variation
homologous
HL_8C3A_033
NA
HL_8HFR_0351/1e/1599:1608No text annotation
homologous
HL_5TBW_035
NA
HL_8HFR_0361/1e/1634:1639GNRA
homologous
HL_8C3A_036
NA
HL_8HFR_0371/1e/1680:1688No text annotation
homologous
HL_8C3A_037
NA
HL_8HFR_0381/1e/1719:1725No text annotation
homologous
HL_5TBW_038
NA
HL_8HFR_0391/1e/1760:1765No text annotation
geometric
HL_5TBW_044
NA
HL_8HFR_0401/1e/1792:1796Mini UNCG
homologous
HL_5TBW_040
NA
HL_8HFR_0411/1e/1844:1851No text annotation
homologous
HL_5TBW_041
NA
HL_8HFR_0421/1e/1862:1868GNRA
homologous
HL_5TBW_042
NA
HL_8HFR_0431/1e/1923:1928UNCG
homologous
HL_8C3A_043
NA
HL_8HFR_0461/1e/2110:2114No text annotation
geometric
HL_5J7L_143
NA
HL_8HFR_0471/1e/2135:2145No text annotation
homologous
HL_8C3A_046
NA
HL_8HFR_0481/1e/2164:2170GNRA
homologous
HL_8C3A_047
NA
HL_8HFR_0491/1e/2220:2225GNRA
homologous
HL_5TBW_048
NA
HL_8HFR_0501/1e/2369:2378No text annotation
homologous
HL_8C3A_051
NA
HL_8HFR_0511/1e/2466:2489No text annotation
HL_8HFR_0521/1e/2535:2544No text annotation
HL_8HFR_0531/1e/2567:2574No text annotation
HL_8HFR_0541/1e/2616:2624No text annotation
homologous
HL_8C3A_055
NA
HL_8HFR_0551/1e/2633:2645No text annotation
homologous
HL_5TBW_055
NA
HL_8HFR_0561/1e/2673:2681No text annotation
homologous
HL_8C3A_057
NA
HL_8HFR_0571/1e/2693:2700Pseudoknot geometry
homologous
HL_8C3A_058
NA
HL_8HFR_0581/1e/2724:2732No text annotation
homologous
HL_8C3A_059
NA
HL_8HFR_0591/1e/2744:2749GNRA
homologous
HL_8C3A_060
NA
HL_8HFR_0601/1e/2776:2784Pseudoknot geometry
homologous
HL_8C3A_061
NA
HL_8HFR_0611/1e/2839:2849No text annotation
geometric
HL_8KAH_003
NA
HL_8HFR_0621/1e/2897:2904No text annotation
homologous
HL_5TBW_062
NA
HL_8HFR_0631/1e/2918:2928No text annotation
geometric
HL_6GSK_218
HL_14063.2
HL_8HFR_0641/1e/2963:2968GNRA
homologous
HL_5TBW_064
NA
HL_8HFR_0651/1e/3025:3030GNRA
homologous
HL_5TBW_065
NA
HL_8HFR_0661/1e/3068:3073Ribsomal LSU H95
homologous
HL_8C3A_067
NA
HL_8HFR_0671/1e/3110:3124No text annotation
homologous
HL_8C3A_068
NA
HL_8HFR_0681/1e/3194:3197No text annotation
homologous
HL_5TBW_068
NA
HL_8HFR_0691/1e/3240:3247No text annotation
homologous
HL_5TBW_069
NA
HL_8HFR_0701/1e/3303:3311No text annotation
geometric
HL_5TBW_070
NA
HL_8HFR_0771/2f/32:45No text annotation
homologous
HL_8C3A_228
NA
HL_8HFR_0721/2f/36:41No text annotation
homologous
HL_5TBW_185
NA
HL_8HFR_0731/2f/88:93GNRA
homologous
HL_4V9F_072
HL_34789.4
HL_8HFR_0781/3n/47:56No text annotation
homologous
HL_8P9A_186
HL_17803.1
HL_8HFR_0741/3n/69:89No text annotation
homologous
HL_8P9A_187
HL_68571.1
HL_8HFR_0751/3n/108:114No text annotation
homologous
HL_5TBW_075
NA
HL_8HFR_0761/3n/124:129No text annotation
homologous
HL_5TBW_076
NA

Problematic loops

#loop idProblemSequence
HL_8HFR_012No text annotation
HL_8HFR_018No text annotation
HL_8HFR_034No text annotation
HL_8HFR_044No text annotation
HL_8HFR_045Mini UNCG
HL_8HFR_071No text annotation

Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
IL_8HFR_0011/1e/7:8,
1/3n/150:152		Single bulged C
homologous
IL_8C3A_002
NA
IL_8HFR_0021/1e/13:15,
1/3n/144:145		Single bulged U
homologous
IL_8C3A_003
NA
IL_8HFR_0031/1e/27:28,
1/1e/56:58		No text annotation
homologous
IL_8C3A_004
NA
IL_8HFR_0041/1e/31:38,
1/1e/45:53		tSH-tHW-tHH-tHS
homologous
IL_5TBW_005
NA
IL_8HFR_0051/1e/82:89,
1/1e/97:103		8x7 Sarcin-Ricin; G-bulge
homologous
IL_5TBW_006
NA
IL_8HFR_0061/1e/123:124,
1/1e/144:149		No text annotation
homologous
IL_5TBW_007
NA
IL_8HFR_0071/1e/125:127,
1/1e/141:143		Isolated non-canonical cWW pair
homologous
IL_8C3A_008
NA
IL_8HFR_0081/1e/163:165,
1/1e/257:258		Single stack bend
homologous
IL_5TBW_009
NA
IL_8HFR_0091/1e/169:172,
1/1e/247:253		No text annotation
IL_8HFR_0121/1e/189:191,
1/1e/204:205		Single bulged U
homologous
IL_8C3A_013
NA
IL_8HFR_0131/1e/337:339,
1/3n/25:26		Single bulged A
homologous
IL_5TBW_013
NA
IL_8HFR_0141/1e/376:379,
1/1e/390:403		No text annotation
homologous
IL_8C3A_015
NA
IL_8HFR_0151/1e/404:410,
1/3n/13:19		Triple sheared with non-canonical cWW
homologous
IL_5TBW_015
NA
IL_8HFR_0161/1e/429:431,
1/1e/628:630		Isolated non-canonical cWW pair
homologous
IL_5TBW_016
NA
IL_8HFR_0181/1e/512:513,
1/1e/577:579		Single bulged A
homologous
IL_5TBW_018
NA
IL_8HFR_0191/1e/517:525,
1/1e/567:573		No text annotation
homologous
IL_5TBW_019
NA
IL_8HFR_0201/1e/531:538,
1/1e/553:561		No text annotation
homologous
IL_5TBW_020
NA
IL_8HFR_0211/1e/668:670,
1/1e/792:794		Isolated non-canonical cWW pair
homologous
IL_5TBW_021
NA
IL_8HFR_0221/1e/680:684,
1/1e/696:700		No text annotation
homologous
IL_5TBW_022
NA
IL_8HFR_0231/1e/725:728,
1/1e/741:745		UAA/GAN variation
homologous
IL_5TBW_023
NA
IL_8HFR_0241/1e/752:753,
1/1e/779:781		Single bulged A
homologous
IL_5TBW_024
NA
IL_8HFR_0251/1e/755:756,
1/1e/775:777		Single bulged U
homologous
IL_5TBW_025
NA
IL_8HFR_0261/1e/758:763,
1/1e/768:773		No text annotation
geometric
IL_5TBW_026
NA
IL_8HFR_0271/1e/803:805,
1/1e/938:940		Isolated non-canonical cWW pair
homologous
IL_8C3A_029
NA
IL_8HFR_0281/1e/805:809,
1/1e/931:938		tHW-tHW cross-strand stack
geometric
IL_5TBW_028
NA
IL_8HFR_0291/1e/833:834,
1/1e/859:861		Single bulged G
homologous
IL_8C3A_032
NA
IL_8HFR_0301/1e/834:838,
1/1e/855:859		Triple sheared
geometric
IL_5J7L_263
NA
IL_8HFR_0311/1e/869:872,
1/1e/888:890		Major groove platform with extra cWW
homologous
IL_8C3A_034
NA
IL_8HFR_0321/1e/873:875,
1/1e/886:887		Single bulged U
geometric
IL_3D2V_001
IL_97561.5
IL_8HFR_0331/1e/907:909,
1/1e/919:923		Multiple bulged bases
geometric
IL_5TBW_033
NA
IL_8HFR_0341/1e/954:956,
1/1e/965:967		Isolated non-canonical cWW pair
homologous
IL_8C3A_037
NA
IL_8HFR_0351/1e/969:970,
1/1e/1111:1113		No text annotation
homologous
IL_8C3A_038
NA
IL_8HFR_0361/1e/977:981,
1/1e/1102:1104		No text annotation
IL_8HFR_0371/1e/983:985,
1/1e/1099:1100		Single bulged G
homologous
IL_8C3A_040
NA
IL_8HFR_0381/1e/991:997,
1/1e/1052:1058		No text annotation
homologous
IL_8C3A_041
NA
IL_8HFR_0391/1e/997:999,
1/1e/1049:1052		No text annotation
geometric
IL_4V9F_053
IL_49140.1
IL_8HFR_1401/1e/997:1004,
1/1e/1046:1052		No text annotation
IL_8HFR_0401/1e/999:1004,
1/1e/1046:1049		C-loop
homologous
IL_5TBW_040
NA
IL_8HFR_1411/1e/1004:1017,
1/1e/1035:1046		No text annotation
IL_8HFR_0411/1e/1069:1071,
1/1e/1087:1089		Isolated non-canonical cWW pair
homologous
IL_8C3A_047
NA
IL_8HFR_0421/1e/1074:1076,
1/1e/1083:1084		Single bulged A
geometric
IL_5TBW_045
NA
IL_8HFR_0431/1e/1120:1122,
1/1e/1136:1138		Isolated non-canonical cWW pair
homologous
IL_8C3A_049
NA
IL_8HFR_0441/1e/1167:1171,
1/1e/1328:1332		UAA/GAN
homologous
IL_8C3A_051
NA
IL_8HFR_0451/1e/1173:1180,
1/1e/1325:1326		SSU/LSU pseudoknot
geometric
IL_5TBW_049
NA
IL_8HFR_0461/1e/1180:1182,
1/1e/1324:1325		Single bulged U
homologous
IL_5TBW_050
NA
IL_8HFR_0471/1e/1187:1194,
1/1e/1314:1319		No text annotation
homologous
IL_5TBW_051
NA
IL_8HFR_0481/1e/1194:1205,
1/1e/1299:1314		No text annotation
geometric
IL_5TBW_052
NA
IL_8HFR_0491/1e/1207:1209,
1/1e/1296:1297		Single bulged U
homologous
IL_5TBW_053
NA
IL_8HFR_0501/1e/1218:1226,
1/1e/1283:1287		Kink-turn
homologous
IL_8C3A_057
NA
IL_8HFR_0511/1e/1234:1238,
1/1e/1250:1254		No text annotation
homologous
IL_8C3A_058
NA
IL_8HFR_0521/1e/1262:1266,
1/1e/1275:1277		Major groove platform with extra cWW
geometric
IL_5D8H_003
IL_36931.2
IL_8HFR_0531/1e/1376:1378,
1/1e/1428:1431		No text annotation
homologous
IL_8C3A_061
NA
IL_8HFR_0541/1e/1385:1387,
1/1e/1420:1421		Single bulged A
homologous
IL_8C3A_062
NA
IL_8HFR_0551/1e/1388:1395,
1/1e/1415:1419		Kink-turn
homologous
IL_8C3A_063
NA
IL_8HFR_0561/1e/1398:1400,
1/1e/1411:1412		Single bulged A
homologous
IL_5TBW_060
NA
IL_8HFR_0571/1e/1444:1450,
1/1e/2354:2359		7x6 Sarcin-Ricin; G-bulge
homologous
IL_5TBW_061
NA
IL_8HFR_0581/1e/1500:1505,
1/1e/1513:1516		No text annotation
homologous
IL_5TBW_062
NA
IL_8HFR_0591/1e/1532:1536,
1/1e/1585:1590		UAA/GAN
homologous
IL_5TBW_063
NA
IL_8HFR_0611/1e/1618:1621,
1/1e/1824:1826		No text annotation
homologous
IL_8C3A_070
NA
IL_8HFR_1421/1e/1623:1624,
1/1e/1819:1822		No text annotation
homologous
IL_8C3A_483
NA
IL_8HFR_0631/1e/1626:1631,
1/1e/1811:1817		No text annotation
IL_8HFR_0641/1e/1645:1649,
1/1e/1806:1810		Triple sheared
homologous
IL_8C3A_073
NA
IL_8HFR_0651/1e/1661:1663,
1/1e/1786:1788		Isolated non-canonical cWW pair
homologous
IL_8C3A_074
NA
IL_8HFR_0661/1e/1669:1670,
1/1e/1778:1780		Single bulged C
geometric
IL_5TBW_069
NA
IL_8HFR_0671/1e/1670:1671,
1/1e/1776:1778		Single stack bend
homologous
IL_5TBW_070
NA
IL_8HFR_0681/1e/1694:1698,
1/1e/1747:1752		No text annotation
homologous
IL_8C3A_077
NA
IL_8HFR_0691/1e/1702:1707,
1/1e/1737:1743		No text annotation
homologous
IL_5TBW_072
NA
IL_8HFR_0701/1e/1711:1717,
1/1e/1727:1733		Kink-turn
homologous
IL_5TBW_073
NA
IL_8HFR_0711/1e/1883:1889,
1/1e/2346:2349		No text annotation
homologous
IL_8C3A_080
NA
IL_8HFR_0721/1e/1895:1897,
1/1e/2338:2340		No text annotation
homologous
IL_8C3A_081
NA
IL_8HFR_0731/1e/1898:1901,
1/1e/2336:2337		Major groove platform; stack outside cWW
homologous
IL_8C3A_082
NA
IL_8HFR_1431/1e/1898:1906,
1/1e/2333:2337		No text annotation
homologous
IL_8P9A_305
IL_80252.1
IL_8HFR_0741/1e/1901:1906,
1/1e/2333:2336		No text annotation
homologous
IL_8C3A_083
NA
IL_8HFR_0751/1e/1918:1923,
1/1e/1928:1934		tSH-tSH-tHH-tHS
geometric
IL_5TBW_078
NA
IL_8HFR_0761/1e/1940:1942,
1/1e/2106:2108		Isolated non-canonical cWW pair
homologous
IL_8C3A_085
NA
IL_8HFR_0771/1e/1947:1948,
1/1e/2098:2101		No text annotation
homologous
IL_8C3A_086
NA
IL_8HFR_1441/1e/1986:1998,
1/1e/2023:2035		No text annotation
IL_8HFR_0801/1e/2128:2129,
1/1e/2323:2325		Single bulged A
homologous
IL_8C3A_087
NA
IL_8HFR_0811/1e/2156:2161,
1/1e/2173:2180		Kink-turn related
homologous
IL_5TBW_083
NA
IL_8HFR_0841/1e/2200:2201,
1/1e/2241:2244		Multiple bulged bases
homologous
IL_8C3A_090
NA
IL_8HFR_0851/1e/2204:2206,
1/1e/2237:2238		Single bulged U
geometric
IL_2ZY6_002
IL_97561.5
IL_8HFR_0861/1e/2206:2210,
1/1e/2235:2237		Major groove platform with extra pair
homologous
IL_5TBW_087
NA
IL_8HFR_0871/1e/2211:2217,
1/1e/2228:2234		No text annotation
homologous
IL_8C3A_093
NA
IL_8HFR_0881/1e/2391:2394,
1/1e/2986:2988		No text annotation
homologous
IL_8C3A_096
NA
IL_8HFR_0891/1e/2396:2397,
1/1e/2981:2984		Major groove platform
geometric
IL_4WF9_078
IL_48076.8
IL_8HFR_0901/1e/2409:2411,
1/1e/2811:2812		Single bulged U
homologous
IL_8C3A_098
NA
IL_8HFR_0911/1e/2412:2413,
1/1e/2807:2810		Minor groove platform
homologous
IL_5TBW_094
NA
IL_8HFR_0921/1e/2423:2425,
1/1e/2604:2607		No text annotation
homologous
IL_8C3A_100
NA
IL_8HFR_0931/1e/2442:2445,
1/1e/2501:2505		No text annotation
homologous
IL_8C3A_102
NA
IL_8HFR_0951/1e/2449:2451,
1/1e/2495:2498		No text annotation
homologous
IL_8C3A_509
NA
IL_8HFR_0971/1e/2520:2526,
1/1e/2584:2587		No text annotation
homologous
IL_5TBW_096
NA
IL_8HFR_0981/1e/2614:2615,
1/1e/2625:2627		Single bulged A
homologous
IL_5TBW_098
NA
IL_8HFR_0991/1e/2666:2668,
1/1e/2686:2690		No text annotation
homologous
IL_8C3A_108
NA
IL_8HFR_1001/1e/2718:2721,
1/1e/2735:2738		Tandem non-canonical cWW pairs
homologous
IL_8C3A_109
NA
IL_8HFR_1011/1e/2770:2773,
1/1e/2787:2788		Single stack bend
geometric
IL_5J7L_032
NA
IL_8HFR_1021/1e/2835:2839,
1/1e/2849:2853		No text annotation
homologous
IL_8C3A_114
NA
IL_8HFR_1031/1e/2879:2881,
1/1e/2943:2947		No text annotation
homologous
IL_8C3A_116
NA
IL_8HFR_1041/1e/2881:2882,
1/1e/2940:2943		Multiple bulged bases
geometric
IL_4V9F_088
IL_44609.2
IL_8HFR_1051/1e/2889:2891,
1/1e/2912:2914		Isolated non-canonical cWW pair
geometric
IL_5TBW_110
NA
IL_8HFR_1451/1e/2889:2892,
1/1e/2909:2914		No text annotation
homologous
IL_8P9A_338
IL_07469.3
IL_8HFR_1061/1e/2891:2892,
1/1e/2909:2912		Major groove platform with intercalation
homologous
IL_8C3A_119
NA
IL_8HFR_1071/1e/2960:2961,
1/1e/2970:2972		Single bulged A
homologous
IL_5TBW_113
NA
IL_8HFR_1081/1e/3004:3007,
1/1e/3139:3144		Double sheared
homologous
IL_5TBW_114
NA
IL_8HFR_1091/1e/3012:3014,
1/1e/3040:3042		Isolated non-canonical cWW pair
homologous
IL_5TBW_115
NA
IL_8HFR_1101/1e/3018:3025,
1/1e/3030:3036		8x7 Sarcin-Ricin; G-bulge
homologous
IL_8C3A_125
NA
IL_8HFR_1111/1e/3047:3051,
1/1e/3091:3094		Major groove minor groove platform with tHH
homologous
IL_5TBW_117
NA
IL_8HFR_1121/1e/3054:3059,
1/1e/3084:3088		UAA/GAN related
homologous
IL_8C3A_127
NA
IL_8HFR_1131/1e/3063:3064,
1/1e/3077:3080		No text annotation
homologous
IL_8C3A_128
NA
IL_8HFR_1141/1e/3103:3107,
1/1e/3127:3131		UAA/GAN
homologous
IL_8C3A_129
NA
IL_8HFR_1161/1e/3177:3179,
1/1e/3210:3211		Single bulged A
geometric
IL_5TBW_123
NA
IL_8HFR_1171/1e/3179:3188,
1/1e/3204:3210		No text annotation
homologous
IL_5TBW_124
NA
IL_8HFR_1181/1e/3193:3194,
1/1e/3197:3199		Single bulged U
geometric
IL_5TBW_125
NA
IL_8HFR_1191/1e/3225:3229,
1/1e/3258:3260		No text annotation
homologous
IL_5TBW_126
NA
IL_8HFR_1201/1e/3233:3235,
1/1e/3252:3254		Isolated non-canonical cWW pair
homologous
IL_5TBW_127
NA
IL_8HFR_1211/1e/3235:3238,
1/1e/3249:3252		Tandem non-canonical cWW pairs
geometric
IL_3R2D_002
IL_71194.2
IL_8HFR_1221/1e/3300:3303,
1/1e/3311:3314		Tandem non-canonical cWW pairs
homologous
IL_5TBW_129
NA
IL_8HFR_1461/1e/3318:3320,
1/1e/3387:3388		No text annotation
IL_8HFR_1231/1e/3324:3325,
1/1e/3381:3383		Single bulged U
homologous
IL_5TBW_131
NA
IL_8HFR_1241/1e/3328:3330,
1/1e/3373:3378		No text annotation
homologous
IL_8C3A_138
NA
IL_8HFR_1251/1e/3332:3337,
1/1e/3367:3371		No text annotation
homologous
IL_5TBW_133
NA
IL_8HFR_1261/1e/3340:3342,
1/1e/3363:3364		Single bulged U
homologous
IL_8C3A_140
NA
IL_8HFR_1271/1e/3342:3345,
1/1e/3360:3363		Double sheared
geometric
IL_4V9F_100
IL_58355.2
IL_8HFR_1291/2f/15:16,
1/2f/63:65		Single bulged A
homologous
IL_5TBW_372
NA
IL_8HFR_1301/2f/21:27,
1/2f/53:58		Minor groove platform related
homologous
IL_5TBW_373
NA
IL_8HFR_1311/2f/28:29,
1/2f/49:52		Minor groove platform
geometric
IL_5TBW_374
NA
IL_8HFR_1321/2f/29:30,
1/2f/47:49		Single stack bend
homologous
IL_5TBW_375
NA
IL_8HFR_1331/2f/32:36,
1/2f/41:45		Symmetric double minor groove platform
geometric
IL_5TBW_376
NA
IL_8HFR_1341/2f/72:80,
1/2f/100:106		8x7 Sarcin-Ricin; G-bulge
homologous
IL_5TBW_377
NA
IL_8HFR_1351/2f/84:87,
1/2f/94:96		Isolated non-canonical cWW pair
homologous
IL_5TBW_378
NA
IL_8HFR_1361/3n/44:64,
1/3n/96:100		No text annotation
geometric
IL_5TBW_144
NA
IL_8HFR_1371/3n/64:66,
1/3n/93:96		Isolated non-canonical cWW pair
homologous
IL_5TBW_145
NA
IL_8HFR_1381/3n/68:69,
1/3n/89:91		Single bulged U
geometric
IL_5TBW_146
NA

Problematic loops

#loop idProblemSequence
IL_8HFR_010No text annotation
IL_8HFR_147Minor groove platform
IL_8HFR_011No text annotation
IL_8HFR_139No text annotation
IL_8HFR_017No text annotation
IL_8HFR_060Single stack bend
IL_8HFR_062No text annotation
IL_8HFR_078Single stack bend
IL_8HFR_079No text annotation
IL_8HFR_082No text annotation
IL_8HFR_083No text annotation
IL_8HFR_094Single stack bend
IL_8HFR_096No text annotation
IL_8HFR_115No text annotation
IL_8HFR_128Multiple bulged bases

Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
J3_8HFR_0011/1e/113:123,
1/1e/149:158,
1/1e/263:267		No text annotation
homologous
J3_8P9A_042
J3_69230.1
J3_8HFR_0181/1e/113:124,
1/1e/144:158,
1/1e/263:267		No text annotation
J3_8HFR_0191/1e/185:189,
1/1e/205:214,
1/1e/226:231		No text annotation
homologous
J3_8P9A_044
J3_97456.1
J3_8HFR_0201/1e/340:356,
1/1e/363:368,
1/3n/21:24		No text annotation
homologous
J3_8P9A_045
J3_07616.1
J3_8HFR_0021/1e/369:376,
1/1e/403:404,
1/3n/19:20		No text annotation
homologous
J3_5TBW_002
NA
J3_8HFR_0211/1e/369:379,
1/1e/390:404,
1/3n/19:20		No text annotation
homologous
J3_8P9A_047
J3_17917.1
J3_8HFR_0031/1e/502:503,
1/1e/588:597,
1/1e/606:611		No text annotation
homologous
J3_5TBW_003
NA
J3_8HFR_0041/1e/814:820,
1/1e/905:907,
1/1e/923:926		No text annotation
homologous
J3_8C3A_003
NA
J3_8HFR_0051/1e/828:831,
1/1e/863:867,
1/1e/892:897		No text annotation
homologous
J3_5TBW_005
NA
J3_8HFR_0061/1e/986:987,
1/1e/1062:1066,
1/1e/1092:1098		No text annotation
homologous
J3_8P9A_051
J3_84137.1
J3_8HFR_0071/1e/1230:1232,
1/1e/1256:1262,
1/1e/1277:1279		No text annotation
homologous
J3_5TBW_007
NA
J3_8HFR_0081/1e/1479:1485,
1/1e/1857:1859,
1/1e/1871:1874		No text annotation
homologous
J3_8C3A_006
NA
J3_8HFR_0091/1e/1488:1491,
1/1e/1837:1843,
1/1e/1852:1854		No text annotation
homologous
J3_5TBW_009
NA
J3_8HFR_0101/1e/1526:1531,
1/1e/1591:1595,
1/1e/1612:1613		No text annotation
homologous
J3_5TBW_010
NA
J3_8HFR_0221/1e/1537:1542,
1/1e/1551:1562,
1/1e/1577:1584		No text annotation
J3_8HFR_0111/1e/1631:1632,
1/1e/1641:1645,
1/1e/1810:1811		No text annotation
homologous
J3_8C3A_054
NA
J3_8HFR_0231/1e/1654:1658,
1/1e/1791:1792,
1/1e/1796:1801		No text annotation
homologous
J3_8P9A_058
J3_08594.1
J3_8HFR_0241/1e/1948:1982,
1/1e/2040:2062,
1/1e/2074:2098		No text annotation
J3_8HFR_0121/1e/2432:2435,
1/1e/2512:2517,
1/1e/2590:2597		No text annotation
homologous
J3_8C3A_008
NA
J3_8HFR_0131/1e/2529:2532,
1/1e/2547:2563,
1/1e/2578:2581		No text annotation
homologous
J3_8C3A_009
NA
J3_8HFR_0251/1e/2651:2653,
1/1e/2754:2765,
1/1e/2793:2798		No text annotation
homologous
J3_8P9A_061
J3_04772.1
J3_8HFR_0141/1e/2664:2666,
1/1e/2690:2692,
1/1e/2701:2706		No text annotation
homologous
J3_8C3A_010
NA
J3_8HFR_0151/1e/2886:2889,
1/1e/2914:2916,
1/1e/2930:2936		No text annotation
homologous
J3_8C3A_011
NA
J3_8HFR_0261/1e/3167:3176,
1/1e/3212:3220,
1/1e/3265:3283		No text annotation
J3_8HFR_0271/2f/9:14,
1/2f/66:67,
1/2f/111:112		No text annotation
homologous
J3_8C3A_059
NA
J3_8HFR_0281/3n/44:45,
1/3n/58:64,
1/3n/96:100		No text annotation
homologous
J3_8P9A_067
J3_01004.1
J4_8HFR_0011/1e/112:113,
1/1e/267:272,
1/1e/293:299,
1/1e/316:319		No text annotation
homologous
J4_8P9A_012
J4_94698.1
J4_8HFR_0021/1e/185:189,
1/1e/205:208,
1/1e/212:214,
1/1e/226:231		No text annotation
homologous
J4_8P9A_013
J4_43318.1
J4_8HFR_0031/1e/1451:1457,
1/1e/1475:1476,
1/1e/1877:1880,
1/1e/2352:2353		No text annotation
homologous
J4_8C3A_003
NA
J4_8HFR_0041/1e/1492:1496,
1/1e/1520:1525,
1/1e/1614:1615,
1/1e/1829:1836		No text annotation
homologous
J4_8P9A_015
J4_47264.1
J4_8HFR_0051/1e/1674:1675,
1/1e/1693:1694,
1/1e/1752:1753,
1/1e/1772:1773		No text annotation
homologous
J4_8P9A_016
J4_75575.1
J4_8HFR_0061/1e/2130:2134,
1/1e/2146:2150,
1/1e/2186:2190,
1/1e/2317:2322		No text annotation
homologous
J4_8P9A_017
J4_78485.1
J4_8HFR_0071/1e/2654:2658,
1/1e/2712:2716,
1/1e/2740:2742,
1/1e/2751:2753		No text annotation
homologous
J4_8C3A_008
NA
J4_8HFR_0081/1e/3010:3012,
1/1e/3042:3043,
1/1e/3098:3100,
1/1e/3134:3136		No text annotation
homologous
J4_8P9A_020
J4_37757.1
J5_8HFR_0011/1e/20:22,
1/3n/35:42,
1/3n/102:107,
1/3n/115:116,
1/3n/137:139		No text annotation
homologous
J5_8C3A_001
NA
J5_8HFR_0021/1e/658:663,
1/1e/799:802,
1/1e/941:944,
1/1e/1375:1376,
1/1e/1431:1437		No text annotation
homologous
J5_8P9A_011
J5_08384.1
J5_8HFR_0031/1e/675:678,
1/1e/702:706,
1/1e/713:721,
1/1e/749:751,
1/1e/782:787		No text annotation
homologous
J5_8P9A_012
J5_56629.1
J5_8HFR_0041/1e/1906:1914,
1/1e/1938:1939,
1/1e/2109:2110,
1/1e/2114:2122,
1/1e/2331:2333		No text annotation
homologous
J5_8P9A_013
J5_99177.1
J5_8HFR_0071/1e/2397:2405,
1/1e/2816:2831,
1/1e/2857:2876,
1/1e/2950:2957,
1/1e/2975:2981		No text annotation
J5_8HFR_0061/1e/2416:2419,
1/1e/2611:2614,
1/1e/2627:2628,
1/1e/2650:2651,
1/1e/2798:2804		No text annotation
homologous
J5_8P9A_015
J5_96125.1
J6_8HFR_0011/1e/22:27,
1/1e/58:68,
1/1e/75:79,
1/1e/106:110,
1/1e/321:331,
1/3n/32:35		No text annotation
J6_8HFR_0021/1e/2416:2419,
1/1e/2611:2614,
1/1e/2627:2628,
1/1e/2650:2653,
1/1e/2754:2765,
1/1e/2793:2804		No text annotation
J7_8HFR_0011/1e/949:954,
1/1e/967:968,
1/1e/1114:1117,
1/1e/1141:1146,
1/1e/1157:1161,
1/1e/1338:1339,
1/1e/1365:1370		No text annotation

Problematic loops

#loop idProblemSequence
J3_8HFR_016No text annotation
J3_8HFR_017No text annotation
J5_8HFR_005No text annotation

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