HL_8HFR_012

3D structure

PDB id

8HFR (explore in PDB, NAKB, or RNA 3D Hub)

Description

NPC-trapped pre-60S particle

Experimental method

ELECTRON MICROSCOPY

Resolution

2.64 Å

Loop

Sequence

UGCCUCGGUA

Length

10 nucleotides

Bulged bases

8HFR|1|1e|G|542, 8HFR|1|1e|C|546

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8HFR_012 not in the Motif Atlas

Homologous match to HL_8P9A_124

Geometric discrepancy: 0.5046

The information below is about HL_8P9A_124

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8HFR|1|1e|U|541
8HFR|1|1e|G|542
8HFR|1|1e|C|543
8HFR|1|1e|C|544
8HFR|1|1e|U|545
8HFR|1|1e|C|546
8HFR|1|1e|G|547
8HFR|1|1e|G|548
8HFR|1|1e|U|549
8HFR|1|1e|A|550

Current chains

Chain 1e

25S ribosomal RNA

Nearby chains

Chain SZ

60S ribosomal protein L20-A