HL_8HFR_013

3D structure

PDB id

8HFR (explore in PDB, NAKB, or RNA 3D Hub)

Description

NPC-trapped pre-60S particle

Experimental method

ELECTRON MICROSCOPY

Resolution

2.64 Å

Loop

Sequence

CGUAAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8HFR_013 not in the Motif Atlas

Homologous match to HL_5TBW_013

Geometric discrepancy: 0.3032

The information below is about HL_5TBW_013

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

360

Unit IDs

8HFR|1|1e|C|599
8HFR|1|1e|G|600
8HFR|1|1e|U|601
8HFR|1|1e|A|602
8HFR|1|1e|A|603
8HFR|1|1e|G|604

Current chains

Chain 1e

25S ribosomal RNA

Nearby chains

Chain DO

60S ribosomal protein L4-A

Chain Gu

60S ribosomal protein L7-A