HL_8HFR_023

3D structure

PDB id

8HFR (explore in PDB, NAKB, or RNA 3D Hub)

Description

NPC-trapped pre-60S particle

Experimental method

ELECTRON MICROSCOPY

Resolution

2.64 Å

Loop

Sequence

CGAAAUG

Length

7 nucleotides

Bulged bases

8HFR|1|1e|A|1025, 8HFR|1|1e|U|1028

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8HFR_023 not in the Motif Atlas

Geometric match to HL_7A0S_007

Geometric discrepancy: 0.3178

The information below is about HL_7A0S_007

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_51020.2

Basepair signature

cWW-cSW-F

Number of instances in this motif group

14

Unit IDs

8HFR|1|1e|C|1023
8HFR|1|1e|G|1024
8HFR|1|1e|A|1025
8HFR|1|1e|A|1026
8HFR|1|1e|A|1027
8HFR|1|1e|U|1028
8HFR|1|1e|G|1029

Current chains

Chain 1e

25S ribosomal RNA

Nearby chains

Chain CW

mRNA export factor MEX67

Chain vV

60S ribosomal export protein NMD3