HL_8HFR_032

3D structure

PDB id

8HFR (explore in PDB, NAKB, or RNA 3D Hub)

Description

NPC-trapped pre-60S particle

Experimental method

ELECTRON MICROSCOPY

Resolution

2.64 Å

Loop

Sequence

AGCAGUU

Length

7 nucleotides

Bulged bases

8HFR|1|1e|G|1507, 8HFR|1|1e|U|1511

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8HFR_032 not in the Motif Atlas

Homologous match to HL_5TBW_032

Geometric discrepancy: 0.077

The information below is about HL_5TBW_032

Detailed Annotation

Pseudoknot geometry with 3' bulge

Broad Annotation

No text annotation

Motif group

HL_40756.1

Basepair signature

cWW-F-F-F

Number of instances in this motif group

14

Unit IDs

8HFR|1|1e|A|1506
8HFR|1|1e|G|1507
8HFR|1|1e|C|1508
8HFR|1|1e|A|1509
8HFR|1|1e|G|1510
8HFR|1|1e|U|1511
8HFR|1|1e|U|1512

Current chains

Chain 1e

25S ribosomal RNA

Nearby chains

Chain Pv

60S ribosomal protein L17-A

Chain RP

60S ribosomal protein L19-A

Chain rA

Nucleolar GTP-binding protein 1