HL_8HFR_034

3D structure

PDB id

8HFR (explore in PDB, NAKB, or RNA 3D Hub)

Description

NPC-trapped pre-60S particle

Experimental method

ELECTRON MICROSCOPY

Resolution

2.64 Å

Loop

Sequence

CUGAUUUUAUGCAG

Length

14 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8HFR|1|1e|C|1563
8HFR|1|1e|U|1564
8HFR|1|1e|G|1565
8HFR|1|1e|A|1566
8HFR|1|1e|U|1567
8HFR|1|1e|U|1568
8HFR|1|1e|U|1569
8HFR|1|1e|U|1570
8HFR|1|1e|A|1571
8HFR|1|1e|U|1572
8HFR|1|1e|G|1573
8HFR|1|1e|C|1574
8HFR|1|1e|A|1575
8HFR|1|1e|G|1576

Current chains

Chain 1e

25S ribosomal RNA

Nearby chains

Chain 3n

5.8S ribosomal RNA; 5.8S rRNA

Chain EX

mRNA export factor MEX67

Chain Xc

60S ribosomal protein L25