HL_8HFR_040

3D structure

PDB id

8HFR (explore in PDB, NAKB, or RNA 3D Hub)

Description

NPC-trapped pre-60S particle

Experimental method

ELECTRON MICROSCOPY

Resolution

2.64 Å

Loop

Sequence

CCGUG

Length

5 nucleotides

Bulged bases

8HFR|1|1e|C|1793, 8HFR|1|1e|G|1794

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8HFR_040 not in the Motif Atlas

Homologous match to HL_5TBW_040

Geometric discrepancy: 0.1084

The information below is about HL_5TBW_040

Detailed Annotation

Mini UNCG

Broad Annotation

No text annotation

Motif group

HL_43793.1

Basepair signature

cWW-F

Number of instances in this motif group

50

Unit IDs

8HFR|1|1e|C|1792
8HFR|1|1e|C|1793
8HFR|1|1e|G|1794
8HFR|1|1e|U|1795
8HFR|1|1e|G|1796

Current chains

Chain 1e

25S ribosomal RNA

Nearby chains

Chain B4

60S ribosomal protein L2-A

Chain nY

60S ribosomal protein L43-A