HL_8HFR_045

3D structure

PDB id

8HFR (explore in PDB, NAKB, or RNA 3D Hub)

Description

NPC-trapped pre-60S particle

Experimental method

ELECTRON MICROSCOPY

Resolution

2.64 Å

Loop

Sequence

UCUUGUA

Length

7 nucleotides

Bulged bases

8HFR|1|1e|U|2067

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8HFR_045 not in the Motif Atlas

Geometric match to HL_4YAZ_004

Geometric discrepancy: 0.231

The information below is about HL_4YAZ_004

Detailed Annotation

Mini UNCG

Broad Annotation

No text annotation

Motif group

HL_90436.3

Basepair signature

cWW-F

Number of instances in this motif group

46

Unit IDs

8HFR|1|1e|U|2065
8HFR|1|1e|C|2066
8HFR|1|1e|U|2067
8HFR|1|1e|U|2068
8HFR|1|1e|G|2069
8HFR|1|1e|U|2070
8HFR|1|1e|A|2071

Current chains

Chain 1e

25S ribosomal RNA

Nearby chains

Chain AN

mRNA export factor MEX67

Chain UF

60S ribosomal protein L22-A