HL_8HFR_048

3D structure

PDB id

8HFR (explore in PDB, NAKB, or RNA 3D Hub)

Description

NPC-trapped pre-60S particle

Experimental method

ELECTRON MICROSCOPY

Resolution

2.64 Å

Loop

Sequence

AGAAAGU

Length

7 nucleotides

Bulged bases

8HFR|1|1e|G|2169

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8HFR_048 not in the Motif Atlas

Homologous match to HL_8C3A_047

Geometric discrepancy: 0.0758

The information below is about HL_8C3A_047

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

360

Unit IDs

8HFR|1|1e|A|2164
8HFR|1|1e|G|2165
8HFR|1|1e|A|2166
8HFR|1|1e|A|2167
8HFR|1|1e|A|2168
8HFR|1|1e|G|2169
8HFR|1|1e|U|2170

Current chains

Chain 1e

25S ribosomal RNA

Nearby chains

Chain B4

60S ribosomal protein L2-A

Chain No

60S ribosomal protein L15-A