HL_8HFR_050

3D structure

PDB id

8HFR (explore in PDB, NAKB, or RNA 3D Hub)

Description

NPC-trapped pre-60S particle

Experimental method

ELECTRON MICROSCOPY

Resolution

2.64 Å

Loop

Sequence

GGGAACGGGC

Length

10 nucleotides

Bulged bases

8HFR|1|1e|A|2372

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8HFR_050 not in the Motif Atlas

Homologous match to HL_8C3A_051

Geometric discrepancy: 0.085

The information below is about HL_8C3A_051

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_90642.8

Basepair signature

cWW-tWH-F-F-F

Number of instances in this motif group

7

Unit IDs

8HFR|1|1e|G|2369
8HFR|1|1e|G|2370
8HFR|1|1e|G|2371
8HFR|1|1e|A|2372
8HFR|1|1e|A|2373
8HFR|1|1e|C|2374
8HFR|1|1e|G|2375
8HFR|1|1e|G|2376
8HFR|1|1e|G|2377
8HFR|1|1e|C|2378

Current chains

Chain 1e

25S ribosomal RNA

Nearby chains

Chain CD

60S ribosomal protein L3

Chain eH

60S ribosomal protein L32