HL_8HFR_054
3D structure
- PDB id
- 8HFR (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- NPC-trapped pre-60S particle
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.64 Å
Loop
- Sequence
- CUGGGGCGG
- Length
- 9 nucleotides
- Bulged bases
- 8HFR|1|1e|G|2618
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8HFR_054 not in the Motif Atlas
- Homologous match to HL_8C3A_055
- Geometric discrepancy: 0.1389
- The information below is about HL_8C3A_055
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_47383.2
- Basepair signature
- cWW-F-F-cWW-F-F
- Number of instances in this motif group
- 11
Unit IDs
8HFR|1|1e|C|2616
8HFR|1|1e|U|2617
8HFR|1|1e|G|2618
8HFR|1|1e|G|2619
8HFR|1|1e|G|2620
8HFR|1|1e|G|2621
8HFR|1|1e|C|2622
8HFR|1|1e|G|2623
8HFR|1|1e|G|2624
Current chains
- Chain 1e
- 25S ribosomal RNA
Nearby chains
- Chain b3
- 60S ribosomal protein L29
- Chain vV
- 60S ribosomal export protein NMD3
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