HL_8HFR_056

3D structure

PDB id

8HFR (explore in PDB, NAKB, or RNA 3D Hub)

Description

NPC-trapped pre-60S particle

Experimental method

ELECTRON MICROSCOPY

Resolution

2.64 Å

Loop

Sequence

AACAGAAAU

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8HFR_056 not in the Motif Atlas

Homologous match to HL_8C3A_057

Geometric discrepancy: 0.1981

The information below is about HL_8C3A_057

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_72777.1

Basepair signature

cWW-F-cWH-F-F-F-F

Number of instances in this motif group

6

Unit IDs

8HFR|1|1e|A|2673
8HFR|1|1e|A|2674
8HFR|1|1e|C|2675
8HFR|1|1e|A|2676
8HFR|1|1e|G|2677
8HFR|1|1e|A|2678
8HFR|1|1e|A|2679
8HFR|1|1e|A|2680
8HFR|1|1e|U|2681

Current chains

Chain 1e

25S ribosomal RNA

Nearby chains

Chain Jy

60S ribosomal protein L11-A