HL_8HFR_068

3D structure

PDB id

8HFR (explore in PDB, NAKB, or RNA 3D Hub)

Description

NPC-trapped pre-60S particle

Experimental method

ELECTRON MICROSCOPY

Resolution

2.64 Å

Loop

Sequence

CUUG

Length

4 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8HFR_068 not in the Motif Atlas

Homologous match to HL_5TBW_068

Geometric discrepancy: 0.246

The information below is about HL_5TBW_068

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_43793.1

Basepair signature

cWW-F

Number of instances in this motif group

50

Unit IDs

8HFR|1|1e|C|3194
8HFR|1|1e|U|3195
8HFR|1|1e|U|3196
8HFR|1|1e|G|3197

Current chains

Chain 1e

25S ribosomal RNA

Nearby chains

Chain Ib

60S ribosomal protein L9-A

Chain MQ

60S ribosomal protein L14-A