HL_8HFR_076

3D structure

PDB id

8HFR (explore in PDB, NAKB, or RNA 3D Hub)

Description

NPC-trapped pre-60S particle

Experimental method

ELECTRON MICROSCOPY

Resolution

2.64 Å

Loop

Sequence

GUAUUC

Length

6 nucleotides

Bulged bases

8HFR|1|3n|U|125

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8HFR_076 not in the Motif Atlas

Homologous match to HL_5TBW_076

Geometric discrepancy: 0.2419

The information below is about HL_5TBW_076

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_45177.3

Basepair signature

cWW-F-F-F

Number of instances in this motif group

3

Unit IDs

8HFR|1|3n|G|124
8HFR|1|3n|U|125
8HFR|1|3n|A|126
8HFR|1|3n|U|127
8HFR|1|3n|U|128
8HFR|1|3n|C|129

Current chains

Chain 3n

5.8S ribosomal RNA

Nearby chains

Chain 1e

Large subunit ribosomal RNA; LSU rRNA

Chain EX

mRNA export factor MEX67