HL_8HL2_017

3D structure

PDB id

8HL2 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM Structures and Translocation Mechanism of Crenarchaeota Ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

4.1 Å

Loop

Sequence

GAUUAGAUACC

Length

11 nucleotides

Bulged bases

8HL2|1|A16S|U|759

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8HL2|1|A16S|G|752
8HL2|1|A16S|A|753
8HL2|1|A16S|U|754
8HL2|1|A16S|U|755
8HL2|1|A16S|A|756
8HL2|1|A16S|G|757
8HL2|1|A16S|A|758
8HL2|1|A16S|U|759
8HL2|1|A16S|A|760
8HL2|1|A16S|C|761
8HL2|1|A16S|C|762

Current chains

Chain A16S

16s rRNA (1493-MER)

Nearby chains

Chain A23S

Large subunit ribosomal RNA; LSU rRNA

Chain AMRN

mRNA (5'-R(P*UP*UP*UP*UP*UP*UP*UP*UP*UP*UP*UP*UP*U)-3')

Chain APTN

Transfer RNA; tRNA

Chain S11P

30S ribosomal protein S11