RNA 3D Hub //

8HL2 Hairpin, Internal, and multi-helix Junction Loop Motifs

Download loops

Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
HL_8HL2_0011/A16S/14:24No text annotation
HL_8HL2_0041/A16S/181:188No text annotation
HL_8HL2_0061/A16S/271:279No text annotation
HL_8HL2_0071/A16S/308:313No text annotation
HL_8HL2_0081/A16S/332:345No text annotation
HL_8HL2_0131/A16S/488:493No text annotation
HL_8HL2_0171/A16S/752:762No text annotation
HL_8HL2_0191/A16S/832:837No text annotation
HL_8HL2_0231/A16S/1040:1045No text annotation
HL_8HL2_0311/A16S/1476:1481No text annotation
HL_8HL2_0321/A23S/49:58Pseudoknot with intercalation
homologous
HL_4V9F_001
HL_17803.2
HL_8HL2_0331/A23S/77:85Pseudoknot geometry
homologous
HL_4V9F_002
HL_52651.3
HL_8HL2_0341/A23S/112:117No text annotation
homologous
HL_4V9F_003
HL_75660.9
HL_8HL2_0361/A23S/142:148No text annotation
geometric
HL_5TBW_012
NA
HL_8HL2_0371/A23S/173:180No text annotation
homologous
HL_4V9F_006
HL_48677.2
HL_8HL2_0381/A23S/204:209No text annotation
geometric
HL_3DIL_004
HL_78347.5
HL_8HL2_0391/A23S/225:231No text annotation
homologous
HL_4V9F_008
HL_76371.3
HL_8HL2_0401/A23S/265:271GNRA
geometric
HL_5J7L_026
NA
HL_8HL2_0421/A23S/370:378T-loop with unstacked turn
homologous
HL_4V9F_012
HL_27670.5
HL_8HL2_0431/A23S/428:435No text annotation
HL_8HL2_0441/A23S/453:461Pseudoknot geometry
homologous
HL_4V9F_014
HL_52651.3
HL_8HL2_0451/A23S/506:511GNRA
homologous
HL_4V9F_015
HL_34789.5
HL_8HL2_0461/A23S/531:537GNRA
homologous
HL_4V9F_016
HL_34789.5
HL_8HL2_0471/A23S/616:621GNRA
homologous
HL_4V9F_017
HL_34789.5
HL_8HL2_0481/A23S/662:671No text annotation
geometric
HL_2Y8W_001
HL_40612.1
HL_8HL2_0491/A23S/709:715No text annotation
homologous
HL_4V9F_019
HL_42293.1
HL_8HL2_0501/A23S/729:734GNRA
homologous
HL_4V9F_020
HL_34789.5
HL_8HL2_0521/A23S/775:780No text annotation
geometric
HL_5U3G_001
HL_75660.9
HL_8HL2_0541/A23S/880:889No text annotation
homologous
HL_4V9F_024
HL_50204.2
HL_8HL2_0551/A23S/914:922No text annotation
geometric
HL_5TBW_021
NA
HL_8HL2_0561/A23S/962:967No text annotation
homologous
HL_4V9F_026
HL_27530.2
HL_8HL2_0571/A23S/1093:1099GNRA
homologous
HL_4V9F_028
HL_34789.5
HL_8HL2_0581/A23S/1115:1122No text annotation
homologous
HL_4V9F_029
HL_47171.2
HL_8HL2_0621/A23S/1365:1370GNRA
homologous
HL_4V9F_033
HL_34789.5
HL_8HL2_0631/A23S/1425:1433T-loop with 2 stacked bulged bases
homologous
HL_4V9F_034
HL_33597.4
HL_8HL2_0641/A23S/1468:1474Pseudoknot geometry with 3' bulge
homologous
HL_4V9F_035
HL_49081.1
HL_8HL2_0651/A23S/1506:1512GNRA
homologous
HL_4V9F_036
HL_34789.5
HL_8HL2_0661/A23S/1533:1546No text annotation
HL_8HL2_0671/A23S/1566:1571GNRA
geometric
HL_5TBW_030
NA
HL_8HL2_0691/A23S/1650:1656Other HL
homologous
HL_4V9F_039
HL_67772.2
HL_8HL2_0711/A23S/1719:1723Mini UNCG
homologous
HL_4V9F_041
HL_90436.4
HL_8HL2_0721/A23S/1766:1773No text annotation
homologous
HL_4V9F_042
HL_28592.3
HL_8HL2_0731/A23S/1785:1791GNRA
geometric
HL_5TBW_042
NA
HL_8HL2_0741/A23S/1848:1853UNCG
geometric
HL_5TBW_043
NA
HL_8HL2_0751/A23S/1876:1883Fab BL3-6 binding hairpin with tSW
geometric
HL_3IVK_003
HL_64036.3
HL_8HL2_0761/A23S/1896:1900No text annotation
homologous
HL_4V9F_046
HL_80709.5
HL_8HL2_0771/A23S/1921:1931No text annotation
homologous
HL_4V9F_047
HL_87681.2
HL_8HL2_0781/A23S/1950:1955GNRA
homologous
HL_4V9F_048
HL_34789.5
HL_8HL2_0801/A23S/2039:2049UNCG variation
geometric
HL_5J7L_200
NA
HL_8HL2_0811/A23S/2065:2072No text annotation
HL_8HL2_0821/A23S/2078:2086No text annotation
homologous
HL_4V9F_051
HL_33350.1
HL_8HL2_0831/A23S/2156:2165No text annotation
homologous
HL_4V9F_052
HL_78372.2
HL_8HL2_0861/A23S/2369:2377LSU P loop
homologous
HL_4V9F_055
HL_11974.3
HL_8HL2_0871/A23S/2385:2399No text annotation
HL_8HL2_1101/A23S/2425:2435No text annotation
HL_8HL2_0881/A23S/2426:2434No text annotation
homologous
HL_4V9F_057
HL_02452.2
HL_8HL2_0891/A23S/2446:2453Pseudoknot geometry
homologous
HL_4V9F_058
HL_52651.3
HL_8HL2_0901/A23S/2477:2487No text annotation
homologous
HL_4V9F_059
HL_02042.2
HL_8HL2_0911/A23S/2499:2504GNRA
homologous
HL_4V9F_060
HL_34789.5
HL_8HL2_0931/A23S/2595:2603No text annotation
homologous
HL_4V9F_062
HL_52011.2
HL_8HL2_0951/A23S/2675:2681LSU A loop
geometric
HL_4WF9_058
HL_48677.2
HL_8HL2_0961/A23S/2718:2723GNRA
homologous
HL_4V9F_065
HL_34789.5
HL_8HL2_0971/A23S/2783:2788GNRA
homologous
HL_4V9F_066
HL_34789.5
HL_8HL2_0981/A23S/2825:2830Ribsomal LSU H95
homologous
HL_4V9F_067
HL_12125.3
HL_8HL2_0991/A23S/2867:2881No text annotation
homologous
HL_4V9F_068
HL_53269.3
HL_8HL2_1001/A23S/2933:2941No text annotation
homologous
HL_4V9F_069
HL_37889.2
HL_8HL2_1111/A5S/35:49No text annotation
homologous
HL_4V9F_074
HL_97756.4
HL_8HL2_1031/A5S/89:94GNRA
homologous
HL_5TBW_186
NA

Problematic loops

#loop idProblemSequence
HL_8HL2_002No text annotation
HL_8HL2_003No text annotation
HL_8HL2_005No text annotation
HL_8HL2_009No text annotation
HL_8HL2_010No text annotation
HL_8HL2_011No text annotation
HL_8HL2_012No text annotation
HL_8HL2_014No text annotation
HL_8HL2_015No text annotation
HL_8HL2_016No text annotation
HL_8HL2_018No text annotation
HL_8HL2_020No text annotation
HL_8HL2_021No text annotation
HL_8HL2_022No text annotation
HL_8HL2_024No text annotation
HL_8HL2_025No text annotation
HL_8HL2_026No text annotation
HL_8HL2_027No text annotation
HL_8HL2_028No text annotation
HL_8HL2_029No text annotation
HL_8HL2_030No text annotation
HL_8HL2_035No text annotation
HL_8HL2_041T-loop with 2 stacked bulged bases
HL_8HL2_051No text annotation
HL_8HL2_053GNRA
HL_8HL2_059No text annotation
HL_8HL2_060GNRA with tandem sheared
HL_8HL2_061No text annotation
HL_8HL2_068No text annotation
HL_8HL2_070No text annotation
HL_8HL2_079GNRA related
HL_8HL2_084No text annotation
HL_8HL2_085GNRA
HL_8HL2_092Pseudoknot geometry
HL_8HL2_094GNRA variation
HL_8HL2_101GNRA
HL_8HL2_102No text annotation
HL_8HL2_104tRNA D-loop
HL_8HL2_105tRNA anticodon loop
HL_8HL2_106No text annotation
HL_8HL2_112No text annotation
HL_8HL2_107No text annotation
HL_8HL2_108tRNA anticodon loop
HL_8HL2_109T-loop with 2 stacked bulged bases

Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
IL_8HL2_1841/A16S/45:47,
1/A16S/408:411		No text annotation
IL_8HL2_0021/A16S/49:55,
1/A16S/371:373		No text annotation
IL_8HL2_0031/A16S/57:59,
1/A16S/368:369		No text annotation
IL_8HL2_0061/A16S/116:119,
1/A16S/243:244		No text annotation
IL_8HL2_0071/A16S/120:124,
1/A16S/239:242		No text annotation
IL_8HL2_0081/A16S/136:141,
1/A16S/156:162		No text annotation
IL_8HL2_0111/A16S/254:259,
1/A16S/289:296		No text annotation
IL_8HL2_0121/A16S/260:264,
1/A16S/286:288		No text annotation
IL_8HL2_0131/A16S/304:305,
1/A16S/316:320		No text annotation
IL_8HL2_0161/A16S/387:388,
1/A16S/399:401		No text annotation
IL_8HL2_0171/A16S/469:478,
1/A16S/505:507		No text annotation
IL_8HL2_0191/A16S/535:541,
1/A16S/850:851		No text annotation
IL_8HL2_0201/A16S/546:550,
1/A16S/723:727		No text annotation
IL_8HL2_0241/A16S/570:577,
1/A16S/595:600		No text annotation
IL_8HL2_0251/A16S/620:621,
1/A16S/717:720		No text annotation
IL_8HL2_0271/A16S/626:632,
1/A16S/706:711		No text annotation
IL_8HL2_0291/A16S/649:654,
1/A16S/665:673		No text annotation
IL_8HL2_0301/A16S/740:744,
1/A16S/770:771		No text annotation
IL_8HL2_0311/A16S/745:749,
1/A16S/765:769		No text annotation
IL_8HL2_0321/A16S/857:864,
1/A16S/875:880		No text annotation
IL_8HL2_0331/A16S/892:894,
1/A16S/1361:1364		No text annotation
IL_8HL2_0341/A16S/895:897,
1/A16S/1359:1360		No text annotation
IL_8HL2_0421/A16S/1016:1020,
1/A16S/1174:1176		No text annotation
IL_8HL2_0521/A16S/1225:1228,
1/A16S/1247:1252		No text annotation
IL_8HL2_0551/A16S/1368:1370,
1/A16S/1462:1465		No text annotation
IL_8HL2_0561/A16S/1370:1373,
1/A16S/1458:1462		No text annotation
IL_8HL2_0571/A16S/1374:1376,
1/A16S/1455:1457		No text annotation
IL_8HL2_0581/A16S/1376:1378,
1/A16S/1452:1455		No text annotation
IL_8HL2_0591/A16S/1381:1383,
1/A16S/1447:1449		No text annotation
IL_8HL2_0601/A16S/1385:1388,
1/A16S/1442:1445		No text annotation
IL_8HL2_0621/A16S/1400:1403,
1/A16S/1427:1430		No text annotation
IL_8HL2_0641/A23S/15:21,
1/A23S/553:559		Triple sheared with non-canonical cWW
homologous
IL_4V9F_001
IL_22311.2
IL_8HL2_0651/A23S/27:28,
1/A23S/485:487		Single bulged A
homologous
IL_4V9F_002
IL_14190.3
IL_8HL2_0681/A23S/71:75,
1/A23S/87:94		Kink-turn
homologous
IL_4V9F_004
IL_71972.2
IL_8HL2_0701/A23S/162:163,
1/A23S/191:193		Single stack bend
homologous
IL_4V9F_005
IL_15011.4
IL_8HL2_0711/A23S/167:172,
1/A23S/181:187		7x6 Sarcin-Ricin; G-bulge
geometric
IL_7RQB_007
NA
IL_8HL2_0721/A23S/218:224,
1/A23S/232:237		7x6 Sarcin-Ricin; G-bulge
homologous
IL_4V9F_007
IL_02666.2
IL_8HL2_0761/A23S/335:337,
1/A23S/386:390		No text annotation
geometric
IL_7RQB_013
NA
IL_8HL2_0771/A23S/343:345,
1/A23S/358:359		Single bulged U
homologous
IL_4V9F_013
IL_97561.6
IL_8HL2_0801/A23S/584:589,
1/A23S/645:647		Isolated non-canonical cWW with bulges
geometric
IL_7ELQ_002
NA
IL_8HL2_0831/A23S/603:607,
1/A23S/631:634		UAA/GAN variation
geometric
IL_5J7L_303
NA
IL_8HL2_0841/A23S/607:612,
1/A23S/625:631		7x6 Sarcin-Ricin; G-bulge
homologous
IL_4V9F_019
IL_16458.6
IL_8HL2_0851/A23S/702:706,
1/A23S/718:722		AAA cross-strand stack
homologous
IL_4V9F_020
IL_66798.3
IL_8HL2_0871/A23S/807:811,
1/A23S/935:942		tHW-tHW cross-strand stack
homologous
IL_4V9F_024
IL_73855.2
IL_8HL2_0881/A23S/830:831,
1/A23S/899:901		Single bulged A
geometric
IL_7A0S_016
IL_14190.3
IL_8HL2_0891/A23S/835:836,
1/A23S/861:863		Single bulged G
geometric
IL_7A0S_017
IL_28408.3
IL_8HL2_0911/A23S/873:877,
1/A23S/891:894		No text annotation
geometric
IL_9E6Q_030
IL_34942.1
IL_8HL2_0921/A23S/877:879,
1/A23S/890:891		Single bulged U
geometric
IL_5TBW_032
NA
IL_8HL2_0931/A23S/911:913,
1/A23S/923:927		Multiple bulged bases
homologous
IL_4V9F_030
IL_57881.1
IL_8HL2_0941/A23S/973:974,
1/A23S/1078:1080		Single stack bend
geometric
IL_7A0S_022
IL_15011.4
IL_8HL2_0951/A23S/979:983,
1/A23S/1066:1073		No text annotation
IL_8HL2_0961/A23S/985:987,
1/A23S/1063:1064		Single bulged A
homologous
IL_4V9F_032
IL_14190.3
IL_8HL2_0971/A23S/991:993,
1/A23S/1057:1059		Isolated non-canonical cWW pair
geometric
IL_1KFO_002
NA
IL_8HL2_0981/A23S/995:999,
1/A23S/1051:1055		5x5 Sarcin-Ricin with intercalated A; G-bulge
homologous
IL_4V9F_033
IL_38862.5
IL_8HL2_0991/A23S/999:1000,
1/A23S/1049:1051		Minor groove platform
geometric
IL_4V9F_034
IL_34520.4
IL_8HL2_1001/A23S/1001:1006,
1/A23S/1045:1048		C-loop
geometric
IL_4WF9_033
IL_16301.2
IL_8HL2_1031/A23S/1134:1138,
1/A23S/1294:1298		UAA/GAN
homologous
IL_4V9F_037
IL_08938.2
IL_8HL2_1041/A23S/1140:1147,
1/A23S/1291:1292		SSU/LSU pseudoknot
homologous
IL_4V9F_038
IL_11411.2
IL_8HL2_1051/A23S/1147:1149,
1/A23S/1290:1291		Single bulged U
geometric
IL_7RQB_038
NA
IL_8HL2_1061/A23S/1154:1160,
1/A23S/1280:1285		Kink-turn related
geometric
IL_4WF9_039
IL_57188.6
IL_8HL2_1911/A23S/1161:1170,
1/A23S/1264:1279		No text annotation
IL_8HL2_1071/A23S/1172:1174,
1/A23S/1261:1262		Single bulged C
geometric
IL_8C3A_152
NA
IL_8HL2_1081/A23S/1183:1191,
1/A23S/1248:1252		Kink-turn
homologous
IL_4V9F_042
IL_99692.3
IL_8HL2_1131/A23S/1340:1342,
1/A23S/1390:1393		Isolated cWS basepair
homologous
IL_4V9F_046
IL_42997.6
IL_8HL2_1141/A23S/1348:1350,
1/A23S/1383:1384		Minor groove platform
geometric
IL_8VTW_080
NA
IL_8HL2_1151/A23S/1352:1358,
1/A23S/1377:1381		Kink-turn
homologous
IL_4V9F_048
IL_90775.2
IL_8HL2_1161/A23S/1405:1412,
1/A23S/2140:2146		8x7 Sarcin-Ricin; G-bulge
geometric
IL_5TBW_116
NA
IL_8HL2_1171/A23S/1454:1457,
1/A23S/1757:1758		Major groove platform; stack outside cWW
homologous
IL_4V9F_050
IL_74641.3
IL_8HL2_1181/A23S/1463:1468,
1/A23S/1474:1477		No text annotation
IL_8HL2_1191/A23S/1494:1498,
1/A23S/1521:1526		UAA/GAN
geometric
IL_5TBW_063
NA
IL_8HL2_1201/A23S/1503:1504,
1/A23S/1514:1516		Single bulged A
geometric
IL_5J7L_064
NA
IL_8HL2_1211/A23S/1598:1601,
1/A23S/1706:1710		tSH-tHW
geometric
IL_7RQB_057
NA
IL_8HL2_1231/A23S/1626:1629,
1/A23S/1677:1681		No text annotation
geometric
IL_5J7L_299
NA
IL_8HL2_1261/A23S/1642:1648,
1/A23S/1658:1664		Kink-turn
homologous
IL_4V9F_058
IL_32016.1
IL_8HL2_1271/A23S/1807:1813,
1/A23S/2133:2135		No text annotation
homologous
IL_4V9F_059
IL_12566.5
IL_8HL2_1281/A23S/1820:1822,
1/A23S/2124:2126		Isolated tWW turn
homologous
IL_4V9F_060
IL_10432.2
IL_8HL2_1291/A23S/1823:1826,
1/A23S/2122:2123		Major groove platform; stack outside cWW
geometric
IL_5TBW_076
NA
IL_8HL2_1921/A23S/1823:1831,
1/A23S/2119:2123		No text annotation
homologous
IL_4V9F_111
IL_80252.2
IL_8HL2_1301/A23S/1826:1831,
1/A23S/2119:2122		Intercalated tWH
homologous
IL_4V9F_062
IL_28217.2
IL_8HL2_1311/A23S/1843:1848,
1/A23S/1853:1859		tSH-tSH-tHH-tHS
homologous
IL_4V9F_063
IL_20700.2
IL_8HL2_1321/A23S/1914:1915,
1/A23S/2109:2111		Single bulged A
homologous
IL_4V9F_064
IL_14190.3
IL_8HL2_1331/A23S/1942:1947,
1/A23S/1958:1965		Kink-turn related
geometric
IL_5TBW_083
NA
IL_8HL2_1351/A23S/1985:1986,
1/A23S/2027:2030		Major groove intercalation
geometric
IL_7A0S_067
IL_77710.2
IL_8HL2_1381/A23S/2062:2063,
1/A23S/2093:2096		Bulged stacked bases
homologous
IL_4V9F_070
IL_24886.3
IL_8HL2_1931/A23S/2063:2074,
1/A23S/2090:2093		No text annotation
homologous
IL_4V9F_071
IL_04332.3
IL_8HL2_1391/A23S/2179:2181,
1/A23S/2741:2742		Major groove platform
geometric
IL_3OXE_003
IL_48076.9
IL_8HL2_1401/A23S/2182:2185,
1/A23S/2736:2740		No text annotation
IL_8HL2_1411/A23S/2196:2198,
1/A23S/2566:2567		Single bulged U
homologous
IL_4V9F_074
IL_97561.6
IL_8HL2_1421/A23S/2199:2200,
1/A23S/2562:2565		Minor groove platform
homologous
IL_4V9F_075
IL_34520.4
IL_8HL2_1431/A23S/2210:2212,
1/A23S/2357:2360		Isolated tHS basepair with bulges
homologous
IL_4V9F_076
IL_87316.3
IL_8HL2_1521/A23S/2367:2368,
1/A23S/2378:2380		Single bulged A
homologous
IL_4V9F_079
IL_14190.3
IL_8HL2_1531/A23S/2419:2421,
1/A23S/2439:2443		Isolated tHS basepair with bulges
homologous
IL_4V9F_080
IL_14250.2
IL_8HL2_1551/A23S/2577:2578,
1/A23S/2622:2624		Single stack bend
geometric
IL_7A0S_054
IL_15011.4
IL_8HL2_1561/A23S/2578:2579,
1/A23S/2620:2622		Major groove platform
homologous
IL_4V9F_082
IL_48076.9
IL_8HL2_1571/A23S/2581:2583,
1/A23S/2617:2618		No text annotation
IL_8HL2_1951/A23S/2581:2585,
1/A23S/2613:2618		No text annotation
IL_8HL2_1581/A23S/2583:2585,
1/A23S/2613:2617		Major groove minor groove platform with extra cWW
geometric
IL_4V9F_084
IL_36931.3
IL_8HL2_1591/A23S/2590:2594,
1/A23S/2604:2608		Double sheared with non-canonical cWW
homologous
IL_4V9F_085
IL_87767.3
IL_8HL2_1601/A23S/2631:2632,
1/A23S/2704:2706		Major groove platform
homologous
IL_4V9F_086
IL_46637.3
IL_8HL2_1611/A23S/2634:2636,
1/A23S/2698:2702		Isolated non-canonical cWW with bulges
geometric
IL_5TBW_108
NA
IL_8HL2_1621/A23S/2636:2637,
1/A23S/2695:2698		Multiple bulged bases
homologous
IL_4V9F_088
IL_44609.3
IL_8HL2_1631/A23S/2646:2647,
1/A23S/2664:2667		Major groove platform with intercalation
homologous
IL_4V9F_089
IL_94991.2
IL_8HL2_1641/A23S/2715:2716,
1/A23S/2725:2727		Single bulged A
homologous
IL_4V9F_090
IL_73464.2
IL_8HL2_1651/A23S/2760:2764,
1/A23S/2896:2904		No text annotation
homologous
IL_4V9F_091
IL_04638.4
IL_8HL2_1661/A23S/2776:2783,
1/A23S/2788:2794		8x7 Sarcin-Ricin; G-bulge
geometric
IL_5TBW_116
NA
IL_8HL2_1671/A23S/2805:2809,
1/A23S/2848:2850		C-loop
homologous
IL_4V9F_093
IL_63596.13
IL_8HL2_1681/A23S/2809:2811,
1/A23S/2846:2848		Isolated non-canonical cWW pair
geometric
IL_6IA2_005
IL_01003.5
IL_8HL2_1691/A23S/2812:2816,
1/A23S/2841:2845		UAA/GAN variation
homologous
IL_4V9F_094
IL_45790.2
IL_8HL2_1701/A23S/2820:2821,
1/A23S/2834:2837		Multiple bulged bases
geometric
IL_5J7L_349
NA
IL_8HL2_1711/A23S/2860:2864,
1/A23S/2884:2888		UAA/GAN
geometric
IL_5TBW_120
NA
IL_8HL2_1741/A23S/2957:2958,
1/A23S/2998:3000		Single bulged A
homologous
IL_4V9F_098
IL_14190.3
IL_8HL2_1751/A23S/2961:2966,
1/A23S/2991:2995		tHS double platform
geometric
IL_4WF9_108
IL_48489.2
IL_8HL2_1761/A23S/2970:2973,
1/A23S/2984:2987		Double sheared
homologous
IL_4V9F_100
IL_58355.3
IL_8HL2_1781/A5S/24:30,
1/A5S/56:61		No text annotation
IL_8HL2_1801/A5S/35:39,
1/A5S/45:49		Symmetric double minor groove platform
homologous
IL_4V9F_104
IL_58103.13
IL_8HL2_1811/A5S/79:82,
1/A5S/100:103		No text annotation
IL_8HL2_1821/A5S/85:88,
1/A5S/95:97		Isolated non-canonical cWW pair
homologous
IL_5TBW_378
NA

Problematic loops

#loop idProblemSequence
IL_8HL2_001No text annotation
IL_8HL2_185No text annotation
IL_8HL2_004No text annotation
IL_8HL2_005No text annotation
IL_8HL2_009No text annotation
IL_8HL2_197No text annotation
IL_8HL2_010No text annotation
IL_8HL2_014No text annotation
IL_8HL2_015No text annotation
IL_8HL2_018No text annotation
IL_8HL2_021No text annotation
IL_8HL2_022No text annotation
IL_8HL2_023No text annotation
IL_8HL2_026No text annotation
IL_8HL2_028No text annotation
IL_8HL2_035No text annotation
IL_8HL2_036No text annotation
IL_8HL2_186No text annotation
IL_8HL2_037No text annotation
IL_8HL2_038No text annotation
IL_8HL2_039No text annotation
IL_8HL2_040No text annotation
IL_8HL2_041No text annotation
IL_8HL2_187No text annotation
IL_8HL2_043No text annotation
IL_8HL2_044No text annotation
IL_8HL2_045No text annotation
IL_8HL2_046No text annotation
IL_8HL2_047No text annotation
IL_8HL2_048No text annotation
IL_8HL2_049No text annotation
IL_8HL2_050No text annotation
IL_8HL2_051No text annotation
IL_8HL2_053No text annotation
IL_8HL2_054No text annotation
IL_8HL2_061No text annotation
IL_8HL2_063Isolated non-canonical cWW pair
IL_8HL2_066Isolated non-canonical cWW pair
IL_8HL2_067Minor groove platform
IL_8HL2_069Isolated non-canonical cWW pair
IL_8HL2_073Major groove platform; stack outside cWW
IL_8HL2_188Kink-turn with embedded cWW pair
IL_8HL2_074No text annotation
IL_8HL2_189Major groove platform with intercalation
IL_8HL2_075No text annotation
IL_8HL2_078No text annotation
IL_8HL2_079No text annotation
IL_8HL2_081Kink-turn
IL_8HL2_082Isolated non-canonical cWW pair
IL_8HL2_086tSH-tWH-tHS
IL_8HL2_090Triple sheared
IL_8HL2_190No text annotation
IL_8HL2_101Isolated cWS basepair
IL_8HL2_102Isolated non-canonical cWW pair
IL_8HL2_109No text annotation
IL_8HL2_110Single stack bend
IL_8HL2_111Major groove platform with extra cWW
IL_8HL2_112Tandem non-canonical cWW pairs
IL_8HL2_122No text annotation
IL_8HL2_124Major groove platform
IL_8HL2_125No text annotation
IL_8HL2_134Minor groove platform, major groove intercalation
IL_8HL2_136Major groove minor groove platform; mini C-loop
IL_8HL2_137No text annotation
IL_8HL2_144Isolated non-canonical cWW pair
IL_8HL2_145Isolated non-canonical cWW pair
IL_8HL2_146No text annotation
IL_8HL2_147No text annotation
IL_8HL2_194No text annotation
IL_8HL2_148No text annotation
IL_8HL2_149No text annotation
IL_8HL2_150Single stack bend
IL_8HL2_151No text annotation
IL_8HL2_154Single stack bend
IL_8HL2_172Single stack bend
IL_8HL2_173Single bulged C
IL_8HL2_177Partly complementary
IL_8HL2_198Tandem non-canonical cWW pairs
IL_8HL2_179Major groove minor groove platform; mini C-loop
IL_8HL2_196No text annotation
IL_8HL2_183Self complementary

Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
J3_8HL2_0201/A16S/48:49,
1/A16S/373:379,
1/A16S/405:407		No text annotation
J3_8HL2_0211/A16S/48:55,
1/A16S/371:379,
1/A16S/405:407		No text annotation
J3_8HL2_0221/A16S/552:554,
1/A16S/617:620,
1/A16S/720:721		No text annotation
J3_8HL2_0231/A16S/552:554,
1/A16S/617:621,
1/A16S/717:721		No text annotation
J3_8HL2_0011/A16S/792:795,
1/A16S/827:831,
1/A16S/838:844		No text annotation
J3_8HL2_0021/A16S/914:917,
1/A16S/1205:1207,
1/A16S/1306:1309		No text annotation
J3_8HL2_0051/A16S/1027:1032,
1/A16S/1071:1076,
1/A16S/1158:1163		No text annotation
J3_8HL2_0061/A16S/1037:1039,
1/A16S/1046:1050,
1/A16S/1063:1066		No text annotation
J3_8HL2_0071/A16S/1080:1082,
1/A16S/1127:1129,
1/A16S/1151:1154		No text annotation
J3_8HL2_0271/A16S/1080:1082,
1/A16S/1127:1132,
1/A16S/1145:1154		No text annotation
J3_8HL2_0281/A23S/21:22,
1/A23S/518:525,
1/A23S/552:553		No text annotation
geometric
J3_4V9F_011
J3_68715.2
J3_8HL2_0291/A23S/21:22,
1/A23S/518:528,
1/A23S/540:553		No text annotation
geometric
J3_4WF9_011
J3_17917.2
J3_8HL2_0301/A23S/23:26,
1/A23S/488:505,
1/A23S/512:517		No text annotation
homologous
J3_4V9F_013
J3_07616.2
J3_8HL2_0311/A23S/46:47,
1/A23S/60:66,
1/A23S/99:103		No text annotation
homologous
J3_4V9F_014
J3_01004.2
J3_8HL2_0321/A23S/291:294,
1/A23S/414:421,
1/A23S/442:447		No text annotation
J3_8HL2_0331/A23S/303:304,
1/A23S/318:319,
1/A23S/404:405		No text annotation
J3_8HL2_0341/A23S/339:343,
1/A23S/359:368,
1/A23S/380:384		No text annotation
geometric
J3_8VTW_041
NA
J3_8HL2_0091/A23S/816:822,
1/A23S/909:911,
1/A23S/927:930		No text annotation
homologous
J3_4V9F_002
J3_46658.2
J3_8HL2_0101/A23S/831:833,
1/A23S/865:871,
1/A23S/896:899		No text annotation
homologous
J3_4V9F_003
J3_69816.2
J3_8HL2_0121/A23S/1450:1453,
1/A23S/1759:1765,
1/A23S/1774:1776		No text annotation
homologous
J3_4V9F_006
J3_76012.2
J3_8HL2_0131/A23S/1558:1564,
1/A23S/1573:1577,
1/A23S/1737:1744		No text annotation
J3_8HL2_0351/A23S/1586:1590,
1/A23S/1718:1719,
1/A23S/1723:1728		No text annotation
homologous
J3_4V9F_017
J3_08594.2
J3_8HL2_0141/A23S/2063:2065,
1/A23S/2072:2074,
1/A23S/2090:2093		No text annotation
J3_8HL2_0151/A23S/2220:2222,
1/A23S/2325:2329,
1/A23S/2344:2349		Kink-turn 3-way junction
geometric
J3_5J7L_044
NA
J3_8HL2_0361/A23S/2404:2406,
1/A23S/2509:2520,
1/A23S/2548:2553		No text annotation
geometric
J3_5TBW_067
NA
J3_8HL2_0161/A23S/2417:2419,
1/A23S/2443:2445,
1/A23S/2454:2459		No text annotation
homologous
J3_4V9F_008
J3_05327.2
J3_8HL2_0171/A23S/2641:2644,
1/A23S/2669:2672,
1/A23S/2684:2691		No text annotation
homologous
J3_4V9F_009
J3_68010.1
J3_8HL2_0371/A23S/2928:2929,
1/A23S/2945:2950,
1/A23S/3008:3012		No text annotation
homologous
J3_4V9F_019
J3_76911.2
J3_8HL2_0381/A5S/12:17,
1/A5S/68:70,
1/A5S/112:113		No text annotation
J4_8HL2_0011/A16S/102:110,
1/A16S/250:252,
1/A16S/298:301,
1/A16S/323:324		No text annotation
J4_8HL2_0031/A16S/541:543,
1/A16S/730:735,
1/A16S/776:787,
1/A16S/849:850		No text annotation
J4_8HL2_0041/A23S/246:252,
1/A23S/286:291,
1/A23S/447:451,
1/A23S/463:469		No text annotation
J4_8HL2_0051/A23S/1413:1420,
1/A23S/1438:1439,
1/A23S/1800:1804,
1/A23S/2138:2139		No text annotation
homologous
J4_4V9F_003
J4_75426.1
J4_8HL2_0061/A23S/1454:1458,
1/A23S/1482:1487,
1/A23S/1550:1551,
1/A23S/1751:1758		No text annotation
homologous
J4_4V9F_004
J4_77353.2
J4_8HL2_0071/A23S/1457:1458,
1/A23S/1482:1487,
1/A23S/1550:1551,
1/A23S/1751:1757		No text annotation
homologous
J4_4V9F_005
J4_48150.2
J4_8HL2_0081/A23S/1606:1607,
1/A23S/1624:1625,
1/A23S/1682:1684,
1/A23S/1699:1701		No text annotation
J4_8HL2_0091/A23S/1916:1920,
1/A23S/1932:1936,
1/A23S/1971:1975,
1/A23S/2103:2108		No text annotation
homologous
J4_4V9F_007
J4_78485.2
J4_8HL2_0101/A23S/1977:1979,
1/A23S/2034:2037,
1/A23S/2051:2062,
1/A23S/2096:2101		No text annotation
J4_8HL2_0111/A23S/2407:2411,
1/A23S/2465:2469,
1/A23S/2495:2497,
1/A23S/2506:2508		No text annotation
homologous
J4_4V9F_009
J4_98139.1
J4_8HL2_0121/A23S/2767:2770,
1/A23S/2800:2801,
1/A23S/2854:2856,
1/A23S/2892:2893		No text annotation
J5_8HL2_0011/A16S/37:43,
1/A16S/413:418,
1/A16S/433:438,
1/A16S/458:465,
1/A16S/511:514		No text annotation
J5_8HL2_0021/A16S/61:64,
1/A16S/93:100,
1/A16S/326:328,
1/A16S/349:351,
1/A16S/362:366		No text annotation
J5_8HL2_0031/A23S/246:252,
1/A23S/286:294,
1/A23S/414:421,
1/A23S/442:451,
1/A23S/463:469		No text annotation
J5_8HL2_0041/A23S/680:685,
1/A23S/801:804,
1/A23S/945:948,
1/A23S/1339:1340,
1/A23S/1393:1399		No text annotation
homologous
J5_4V9F_003
J5_15067.1
J5_8HL2_0051/A23S/697:700,
1/A23S/724:728,
1/A23S/735:739,
1/A23S/769:770,
1/A23S/785:789		No text annotation
homologous
J5_4V9F_004
J5_43592.1
J5_8HL2_0061/A23S/1831:1839,
1/A23S/1863:1864,
1/A23S/1895:1896,
1/A23S/1900:1908,
1/A23S/2117:2119		No text annotation
homologous
J5_4V9F_006
J5_99177.2
J5_8HL2_0071/A23S/2186:2193,
1/A23S/2570:2577,
1/A23S/2624:2631,
1/A23S/2706:2712,
1/A23S/2730:2735		No text annotation
J5_8HL2_0081/A23S/2203:2206,
1/A23S/2364:2367,
1/A23S/2380:2381,
1/A23S/2403:2404,
1/A23S/2553:2559		No text annotation
homologous
J5_4V9F_008
J5_96125.2
J6_8HL2_0011/A23S/35:36,
1/A23S/158:162,
1/A23S/193:203,
1/A23S/210:214,
1/A23S/241:245,
1/A23S/470:477		No text annotation
J7_8HL2_0011/A23S/953:958,
1/A23S/971:972,
1/A23S/1081:1084,
1/A23S/1108:1113,
1/A23S/1124:1128,
1/A23S/1304:1305,
1/A23S/1329:1334		No text annotation

Problematic loops

#loop idProblemSequence
J3_8HL2_024No text annotation
J3_8HL2_025No text annotation
J3_8HL2_026No text annotation
J3_8HL2_003No text annotation
J3_8HL2_004No text annotation
J3_8HL2_008No text annotation
J3_8HL2_011No text annotation
J3_8HL2_018No text annotation
J3_8HL2_019No text annotation
J4_8HL2_002No text annotation
J4_8HL2_013No text annotation
J4_8HL2_014tRNA junction

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