HL_8HL2_032

3D structure

PDB id

8HL2 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM Structures and Translocation Mechanism of Crenarchaeota Ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

4.1 Å

Loop

Sequence

CGGCAAGCAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8HL2_032 not in the Motif Atlas

Homologous match to HL_4V9F_001

Geometric discrepancy: 0.2038

The information below is about HL_4V9F_001

Detailed Annotation

Pseudoknot with intercalation

Broad Annotation

No text annotation

Motif group

HL_17803.2

Basepair signature

cWW-F-F-F-F-F-F-F-F

Number of instances in this motif group

10

Unit IDs

8HL2|1|A23S|C|49
8HL2|1|A23S|G|50
8HL2|1|A23S|G|51
8HL2|1|A23S|C|52
8HL2|1|A23S|A|53
8HL2|1|A23S|A|54
8HL2|1|A23S|G|55
8HL2|1|A23S|C|56
8HL2|1|A23S|A|57
8HL2|1|A23S|G|58

Current chains

Chain A23S

23s rRNA (3000-MER)

Nearby chains

Chain L23P

50S ribosomal protein L23

Chain L29P

50S ribosomal protein L29

Chain L39E

50S ribosomal protein L39e