HL_8HL2_040

3D structure

PDB id

8HL2 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM Structures and Translocation Mechanism of Crenarchaeota Ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

4.1 Å

Loop

Sequence

UGAUAAG

Length

7 nucleotides

Bulged bases

8HL2|1|A23S|U|268

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8HL2_040 not in the Motif Atlas

Geometric match to HL_5J7L_026

Geometric discrepancy: 0.2861

The information below is about HL_5J7L_026

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_93535.1

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

6

Unit IDs

8HL2|1|A23S|U|265
8HL2|1|A23S|G|266
8HL2|1|A23S|A|267
8HL2|1|A23S|U|268
8HL2|1|A23S|A|269
8HL2|1|A23S|A|270
8HL2|1|A23S|G|271

Current chains

Chain A23S

23s rRNA (3000-MER)

Nearby chains

Chain L15E

50S ribosomal protein L15e