HL_8HL2_044

3D structure

PDB id

8HL2 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM Structures and Translocation Mechanism of Crenarchaeota Ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

4.1 Å

Loop

Sequence

GACACGUGC

Length

9 nucleotides

Bulged bases

8HL2|1|A23S|A|454

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8HL2_044 not in the Motif Atlas

Homologous match to HL_4V9F_014

Geometric discrepancy: 0.2487

The information below is about HL_4V9F_014

Detailed Annotation

Pseudoknot geometry

Broad Annotation

No text annotation

Motif group

HL_52651.3

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

31

Unit IDs

8HL2|1|A23S|G|453
8HL2|1|A23S|A|454
8HL2|1|A23S|C|455
8HL2|1|A23S|A|456
8HL2|1|A23S|C|457
8HL2|1|A23S|G|458
8HL2|1|A23S|U|459
8HL2|1|A23S|G|460
8HL2|1|A23S|C|461

Current chains

Chain A23S

23s rRNA (3000-MER)

Nearby chains

Chain L15P

50S ribosomal protein L15

Chain L44E

50S ribosomal protein L44e