HL_8HL2_047

3D structure

PDB id

8HL2 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM Structures and Translocation Mechanism of Crenarchaeota Ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

4.1 Å

Loop

Sequence

CGCAAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8HL2_047 not in the Motif Atlas

Homologous match to HL_4V9F_017

Geometric discrepancy: 0.1848

The information below is about HL_4V9F_017

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_34789.5

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

428

Unit IDs

8HL2|1|A23S|C|616
8HL2|1|A23S|G|617
8HL2|1|A23S|C|618
8HL2|1|A23S|A|619
8HL2|1|A23S|A|620
8HL2|1|A23S|G|621

Current chains

Chain A23S

23s rRNA (3000-MER)

Nearby chains

Chain ALX0

50S ribosomal protein L18Ae

Chain L142

50S ribosomal protein L14e

Chain L30P

50S ribosomal protein L30