HL_8HL2_054
3D structure
- PDB id
- 8HL2 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM Structures and Translocation Mechanism of Crenarchaeota Ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.1 Å
Loop
- Sequence
- ACGUGCAAUU
- Length
- 10 nucleotides
- Bulged bases
- 8HL2|1|A23S|G|882, 8HL2|1|A23S|U|883, 8HL2|1|A23S|A|887, 8HL2|1|A23S|U|888
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8HL2_054 not in the Motif Atlas
- Homologous match to HL_4V9F_024
- Geometric discrepancy: 0.1798
- The information below is about HL_4V9F_024
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_50204.2
- Basepair signature
- cWW-cWS-tSW-F-F
- Number of instances in this motif group
- 12
Unit IDs
8HL2|1|A23S|A|880
8HL2|1|A23S|C|881
8HL2|1|A23S|G|882
8HL2|1|A23S|U|883
8HL2|1|A23S|G|884
8HL2|1|A23S|C|885
8HL2|1|A23S|A|886
8HL2|1|A23S|A|887
8HL2|1|A23S|U|888
8HL2|1|A23S|U|889
Current chains
- Chain A23S
- 23s rRNA (3000-MER)
Nearby chains
- Chain AL3P
- 50S ribosomal protein L3
- Chain APTP
- PHE-PHE-PHE-PHE-PHE-PHE
- Chain L22P
- 50S ribosomal protein L22
- Chain L37E
- 50S ribosomal protein L37e
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