HL_8HL2_056

3D structure

PDB id

8HL2 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM Structures and Translocation Mechanism of Crenarchaeota Ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

4.1 Å

Loop

Sequence

UCCUAG

Length

6 nucleotides

Bulged bases

8HL2|1|A23S|C|963, 8HL2|1|A23S|A|966

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8HL2_056 not in the Motif Atlas

Homologous match to HL_4V9F_026

Geometric discrepancy: 0.4003

The information below is about HL_4V9F_026

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_27530.2

Basepair signature

cWW-F-F

Number of instances in this motif group

11

Unit IDs

8HL2|1|A23S|U|962
8HL2|1|A23S|C|963
8HL2|1|A23S|C|964
8HL2|1|A23S|U|965
8HL2|1|A23S|A|966
8HL2|1|A23S|G|967

Current chains

Chain A23S

23s rRNA (3000-MER)

Nearby chains

Chain L15P

50S ribosomal protein L15

Chain L44E

50S ribosomal protein L44e