HL_8HL2_058

3D structure

PDB id

8HL2 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM Structures and Translocation Mechanism of Crenarchaeota Ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

4.1 Å

Loop

Sequence

GGAACAAC

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8HL2_058 not in the Motif Atlas

Homologous match to HL_4V9F_029

Geometric discrepancy: 0.2943

The information below is about HL_4V9F_029

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_47171.2

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

11

Unit IDs

8HL2|1|A23S|G|1115
8HL2|1|A23S|G|1116
8HL2|1|A23S|A|1117
8HL2|1|A23S|A|1118
8HL2|1|A23S|C|1119
8HL2|1|A23S|A|1120
8HL2|1|A23S|A|1121
8HL2|1|A23S|C|1122

Current chains

Chain A23S

23s rRNA (3000-MER)

Nearby chains

Chain A5S

5S ribosomal RNA; 5S rRNA

Chain L30P

50S ribosomal protein L30