HL_8HL2_061

3D structure

PDB id

8HL2 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM Structures and Translocation Mechanism of Crenarchaeota Ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

4.1 Å

Loop

Sequence

CUACUG

Length

6 nucleotides

Bulged bases

8HL2|1|A23S|A|1316, 8HL2|1|A23S|U|1318

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8HL2_061 not in the Motif Atlas

Geometric match to HL_5MSF_001

Geometric discrepancy: 0.1955

The information below is about HL_5MSF_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_89167.3

Basepair signature

cWW-F-F

Number of instances in this motif group

23

Unit IDs

8HL2|1|A23S|C|1314
8HL2|1|A23S|U|1315
8HL2|1|A23S|A|1316
8HL2|1|A23S|C|1317
8HL2|1|A23S|U|1318
8HL2|1|A23S|G|1320

Current chains

Chain A23S

23s rRNA (3000-MER)

Nearby chains

Chain AL4P

50S ribosomal protein L4

Chain L18E

50S ribosomal protein L18e