HL_8HL2_064

3D structure

PDB id

8HL2 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM Structures and Translocation Mechanism of Crenarchaeota Ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

4.1 Å

Loop

Sequence

GUUCGUC

Length

7 nucleotides

Bulged bases

8HL2|1|A23S|U|1469, 8HL2|1|A23S|U|1473

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8HL2_064 not in the Motif Atlas

Homologous match to HL_4V9F_035

Geometric discrepancy: 0.3214

The information below is about HL_4V9F_035

Detailed Annotation

Pseudoknot geometry with 3' bulge

Broad Annotation

No text annotation

Motif group

HL_49081.1

Basepair signature

cWW-F-F-F

Number of instances in this motif group

17

Unit IDs

8HL2|1|A23S|G|1468
8HL2|1|A23S|U|1469
8HL2|1|A23S|U|1470
8HL2|1|A23S|C|1471
8HL2|1|A23S|G|1472
8HL2|1|A23S|U|1473
8HL2|1|A23S|C|1474

Current chains

Chain A23S

23s rRNA (3000-MER)

Nearby chains

Chain L19E

50S ribosomal protein L19e

Chain L22P

50S ribosomal protein L22

Chain L39E

50S ribosomal protein L39e