HL_8HL2_079

3D structure

PDB id

8HL2 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM Structures and Translocation Mechanism of Crenarchaeota Ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

4.1 Å

Loop

Sequence

GGUUCAAC

Length

8 nucleotides

Bulged bases

8HL2|1|A23S|U|2007

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8HL2_079 not in the Motif Atlas

Homologous match to HL_4V9F_049

Geometric discrepancy: 0.2097

The information below is about HL_4V9F_049

Detailed Annotation

GNRA related

Broad Annotation

GNRA related

Motif group

HL_38635.1

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

6

Unit IDs

8HL2|1|A23S|G|2004
8HL2|1|A23S|G|2005
8HL2|1|A23S|U|2006
8HL2|1|A23S|U|2007
8HL2|1|A23S|C|2008
8HL2|1|A23S|A|2009
8HL2|1|A23S|A|2010
8HL2|1|A23S|C|2011

Current chains

Chain A23S

23s rRNA (3000-MER)

Nearby chains

Chain AL1P

50S ribosomal protein L1

Chain L44E

50S ribosomal protein L44e