HL_8HL2_080

3D structure

PDB id

8HL2 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM Structures and Translocation Mechanism of Crenarchaeota Ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

4.1 Å

Loop

Sequence

GUAACUCUGAC

Length

11 nucleotides

Bulged bases

8HL2|1|A23S|A|2042

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8HL2_080 not in the Motif Atlas

Geometric match to HL_5J7L_200

Geometric discrepancy: 0.2601

The information below is about HL_5J7L_200

Detailed Annotation

UNCG variation

Broad Annotation

UNCG variation

Motif group

HL_08100.1

Basepair signature

cWW-F-F-F

Number of instances in this motif group

4

Unit IDs

8HL2|1|A23S|G|2039
8HL2|1|A23S|U|2040
8HL2|1|A23S|A|2041
8HL2|1|A23S|A|2042
8HL2|1|A23S|C|2043
8HL2|1|A23S|U|2044
8HL2|1|A23S|C|2045
8HL2|1|A23S|U|2046
8HL2|1|A23S|G|2047
8HL2|1|A23S|A|2048
8HL2|1|A23S|C|2049

Current chains

Chain A23S

23s rRNA (3000-MER)

Nearby chains

Chain A16S

Small subunit ribosomal RNA; SSU rRNA

Chain AEFG

Elongation factor 2

Chain APTN

Transfer RNA; tRNA