HL_8HL2_082

3D structure

PDB id

8HL2 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM Structures and Translocation Mechanism of Crenarchaeota Ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

4.1 Å

Loop

Sequence

GGUAAGUUC

Length

9 nucleotides

Bulged bases

8HL2|1|A23S|U|2084

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8HL2_082 not in the Motif Atlas

Homologous match to HL_4V9F_051

Geometric discrepancy: 0.2451

The information below is about HL_4V9F_051

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_33350.1

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

6

Unit IDs

8HL2|1|A23S|G|2078
8HL2|1|A23S|G|2079
8HL2|1|A23S|U|2080
8HL2|1|A23S|A|2081
8HL2|1|A23S|A|2082
8HL2|1|A23S|G|2083
8HL2|1|A23S|U|2084
8HL2|1|A23S|U|2085
8HL2|1|A23S|C|2086

Current chains

Chain A23S

23s rRNA (3000-MER)

Nearby chains

Chain A16S

Small subunit ribosomal RNA; SSU rRNA

Chain L14P

50S ribosomal protein L14