HL_8HL2_083

3D structure

PDB id

8HL2 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM Structures and Translocation Mechanism of Crenarchaeota Ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

4.1 Å

Loop

Sequence

GUGCACAGUC

Length

10 nucleotides

Bulged bases

8HL2|1|A23S|C|2159, 8HL2|1|A23S|A|2160, 8HL2|1|A23S|C|2161

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8HL2_083 not in the Motif Atlas

Homologous match to HL_4V9F_052

Geometric discrepancy: 0.2068

The information below is about HL_4V9F_052

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_78372.2

Basepair signature

cWW-tWH-F-F-F

Number of instances in this motif group

11

Unit IDs

8HL2|1|A23S|G|2156
8HL2|1|A23S|U|2157
8HL2|1|A23S|G|2158
8HL2|1|A23S|C|2159
8HL2|1|A23S|A|2160
8HL2|1|A23S|C|2161
8HL2|1|A23S|A|2162
8HL2|1|A23S|G|2163
8HL2|1|A23S|U|2164
8HL2|1|A23S|C|2165

Current chains

Chain A23S

23s rRNA (3000-MER)

Nearby chains

Chain AL3P

50S ribosomal protein L3

Chain L32E

50S ribosomal protein L32e